Results 21 - 40 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5781 | 5' | -57.2 | NC_001806.1 | + | 21513 | 0.7 | 0.708155 |
Target: 5'- cCCCGGCcCGGGG-CCGCGaaCGGGAGg -3' miRNA: 3'- -GGGUUGaGCCUUgGGCGCcaGUCCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 23375 | 0.67 | 0.835111 |
Target: 5'- cCCCGGCUCGGAcGCCCGCGc------- -3' miRNA: 3'- -GGGUUGAGCCU-UGGGCGCcaguccuc -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 23570 | 0.7 | 0.66764 |
Target: 5'- gCCCAGCcacacggCGGcGCCCGCGGcCGccgcccuGGAGg -3' miRNA: 3'- -GGGUUGa------GCCuUGGGCGCCaGU-------CCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 26473 | 1.09 | 0.002556 |
Target: 5'- gCCCAACUCGGAACCCGCGGUCAGGAGc -3' miRNA: 3'- -GGGUUGAGCCUUGGGCGCCAGUCCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 26698 | 0.66 | 0.893626 |
Target: 5'- gCCCGGCgUGG-GCCCGgGGggCGGGGc -3' miRNA: 3'- -GGGUUGaGCCuUGGGCgCCa-GUCCUc -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 26975 | 0.69 | 0.76541 |
Target: 5'- gCCgCGGCUCGuGGGCCCGCGaG-CGGGc- -3' miRNA: 3'- -GG-GUUGAGC-CUUGGGCGC-CaGUCCuc -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 27311 | 0.67 | 0.850149 |
Target: 5'- aCCAGCguccgccgagucuUCGGGGCCCGgcccauUGGgCGGGAGu -3' miRNA: 3'- gGGUUG-------------AGCCUUGGGC------GCCaGUCCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 30627 | 0.69 | 0.764484 |
Target: 5'- cUCCGACUCaGGGCCgggggggCGCGGcCAGGGu -3' miRNA: 3'- -GGGUUGAGcCUUGG-------GCGCCaGUCCUc -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 31095 | 0.71 | 0.63867 |
Target: 5'- aCCCGGCUgCGGG--CCGCGGUCcccggcuGGAGc -3' miRNA: 3'- -GGGUUGA-GCCUugGGCGCCAGu------CCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 31282 | 0.73 | 0.491783 |
Target: 5'- gCCugcgguCUCGGcACCCGUGGUCcGGGGa -3' miRNA: 3'- gGGuu----GAGCCuUGGGCGCCAGuCCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 33117 | 0.73 | 0.520211 |
Target: 5'- uCCgGACggggccCGGAcCgCCGCGGUCGGGGGc -3' miRNA: 3'- -GGgUUGa-----GCCUuG-GGCGCCAGUCCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 37602 | 0.67 | 0.850922 |
Target: 5'- gCCAGCacCGGGGCCCaggggcuauucGCGG-CGGGAa -3' miRNA: 3'- gGGUUGa-GCCUUGGG-----------CGCCaGUCCUc -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 37791 | 0.68 | 0.78368 |
Target: 5'- gCCGggGCgcgGGggUCCGCGGgCGGGGGg -3' miRNA: 3'- gGGU--UGag-CCuuGGGCGCCaGUCCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 41718 | 0.69 | 0.762628 |
Target: 5'- cCCCGggACUggCGGGcgcaaacgcgggccACCCGCGGgggacCAGGAGc -3' miRNA: 3'- -GGGU--UGA--GCCU--------------UGGGCGCCa----GUCCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 43284 | 0.69 | 0.727578 |
Target: 5'- uUCCGccCUCGGAggcggAgCCGCGGcugCAGGAGg -3' miRNA: 3'- -GGGUu-GAGCCU-----UgGGCGCCa--GUCCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 43619 | 0.71 | 0.642673 |
Target: 5'- uCCCAggcuAUUCGGAGCauggccgagagugaCGUGGUCAuGGAGg -3' miRNA: 3'- -GGGU----UGAGCCUUGg-------------GCGCCAGU-CCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 46225 | 0.8 | 0.213922 |
Target: 5'- cCCCGGCggCGGAgaccACCCGCGG-CAGGAa -3' miRNA: 3'- -GGGUUGa-GCCU----UGGGCGCCaGUCCUc -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 49099 | 0.86 | 0.08642 |
Target: 5'- gUCGGCUCGcGAACCCGCGGggcgCAGGAGg -3' miRNA: 3'- gGGUUGAGC-CUUGGGCGCCa---GUCCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 50485 | 0.73 | 0.529832 |
Target: 5'- gCCCugcccCUgGGAAgcCCCGCGGUCGuGGGGg -3' miRNA: 3'- -GGGuu---GAgCCUU--GGGCGCCAGU-CCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 53870 | 0.67 | 0.850922 |
Target: 5'- gCCAGCUguuUGGcAGCCgCGCGGggaUCAGGGu -3' miRNA: 3'- gGGUUGA---GCC-UUGG-GCGCC---AGUCCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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