miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5782 3' -54.5 NC_001806.1 + 33772 0.66 0.939093
Target:  5'- -gGCgGCUGcGG--CGGCCGCCGUGUUc -3'
miRNA:   3'- aaUG-UGAC-CUugGCCGGCGGUACAAc -5'
5782 3' -54.5 NC_001806.1 + 77719 0.66 0.939093
Target:  5'- -cACcCUGGAGUCGGCCucgaccgucacgGCCAUGUa- -3'
miRNA:   3'- aaUGuGACCUUGGCCGG------------CGGUACAac -5'
5782 3' -54.5 NC_001806.1 + 112230 0.66 0.939093
Target:  5'- aUAC-CUGGAcaaCGGCCGCC-UGg-- -3'
miRNA:   3'- aAUGuGACCUug-GCCGGCGGuACaac -5'
5782 3' -54.5 NC_001806.1 + 113996 0.66 0.934105
Target:  5'- -gACGCcgcGGAugACCGGCCGCaCcgGggGg -3'
miRNA:   3'- aaUGUGa--CCU--UGGCCGGCG-GuaCaaC- -5'
5782 3' -54.5 NC_001806.1 + 70511 0.66 0.933593
Target:  5'- -cGC-CUGGGGCCcuGGCCccccgagGCCAUGggGg -3'
miRNA:   3'- aaUGuGACCUUGG--CCGG-------CGGUACaaC- -5'
5782 3' -54.5 NC_001806.1 + 54869 0.66 0.928866
Target:  5'- --cCGCgggGGGACCuGGCCGCCGc---- -3'
miRNA:   3'- aauGUGa--CCUUGG-CCGGCGGUacaac -5'
5782 3' -54.5 NC_001806.1 + 20916 0.66 0.928866
Target:  5'- -aGCGCgggaggGGGAUCGGCCGuCCcUGUc- -3'
miRNA:   3'- aaUGUGa-----CCUUGGCCGGC-GGuACAac -5'
5782 3' -54.5 NC_001806.1 + 20814 0.66 0.928866
Target:  5'- -cACAC-GGAGCgCGGCUGCCGa---- -3'
miRNA:   3'- aaUGUGaCCUUG-GCCGGCGGUacaac -5'
5782 3' -54.5 NC_001806.1 + 33006 0.66 0.923375
Target:  5'- --cCACgGGGGCCGGCCGUUGgcgGUa- -3'
miRNA:   3'- aauGUGaCCUUGGCCGGCGGUa--CAac -5'
5782 3' -54.5 NC_001806.1 + 149797 0.66 0.917633
Target:  5'- -cGCGCUGGGGgCGGCCcucagGCCGgcggGUa- -3'
miRNA:   3'- aaUGUGACCUUgGCCGG-----CGGUa---CAac -5'
5782 3' -54.5 NC_001806.1 + 103100 0.66 0.917633
Target:  5'- -gGCGCUcgauaucgacggGGAGCuCGGCCGCCugcAUGgcGg -3'
miRNA:   3'- aaUGUGA------------CCUUG-GCCGGCGG---UACaaC- -5'
5782 3' -54.5 NC_001806.1 + 150680 0.66 0.911641
Target:  5'- -cGCGCUGG---CGGCCGCCgAUGg-- -3'
miRNA:   3'- aaUGUGACCuugGCCGGCGG-UACaac -5'
5782 3' -54.5 NC_001806.1 + 102487 0.66 0.911641
Target:  5'- gUACugUGG--CCGGCCGCCcucgGUc- -3'
miRNA:   3'- aAUGugACCuuGGCCGGCGGua--CAac -5'
5782 3' -54.5 NC_001806.1 + 3033 0.66 0.911641
Target:  5'- gUGCGCUGGccGCC-GCCGCCAgcaGggGg -3'
miRNA:   3'- aAUGUGACCu-UGGcCGGCGGUa--CaaC- -5'
5782 3' -54.5 NC_001806.1 + 102666 0.66 0.911641
Target:  5'- -gGCGCUGGcccacauacAGCCGGCCGCaCGc---- -3'
miRNA:   3'- aaUGUGACC---------UUGGCCGGCG-GUacaac -5'
5782 3' -54.5 NC_001806.1 + 58168 0.67 0.905399
Target:  5'- -cGCGUUGGGACCGGUgGCgGUGa-- -3'
miRNA:   3'- aaUGUGACCUUGGCCGgCGgUACaac -5'
5782 3' -54.5 NC_001806.1 + 90850 0.67 0.898911
Target:  5'- -----gUGGGACCcGCCGCCGUGg-- -3'
miRNA:   3'- aaugugACCUUGGcCGGCGGUACaac -5'
5782 3' -54.5 NC_001806.1 + 68076 0.67 0.883071
Target:  5'- cUACGCUGucccccacccacgcGAGCCGGgCGUCAUGg-- -3'
miRNA:   3'- aAUGUGAC--------------CUUGGCCgGCGGUACaac -5'
5782 3' -54.5 NC_001806.1 + 30292 0.67 0.878001
Target:  5'- -gGgGC-GGAGCCGGCCGCCc----- -3'
miRNA:   3'- aaUgUGaCCUUGGCCGGCGGuacaac -5'
5782 3' -54.5 NC_001806.1 + 115084 0.68 0.870563
Target:  5'- -cGC-CUGGGGCCGGCCcagcccguccCCGUGUUc -3'
miRNA:   3'- aaUGuGACCUUGGCCGGc---------GGUACAAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.