Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5782 | 3' | -54.5 | NC_001806.1 | + | 150680 | 0.66 | 0.911641 |
Target: 5'- -cGCGCUGG---CGGCCGCCgAUGg-- -3' miRNA: 3'- aaUGUGACCuugGCCGGCGG-UACaac -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 149797 | 0.66 | 0.917633 |
Target: 5'- -cGCGCUGGGGgCGGCCcucagGCCGgcggGUa- -3' miRNA: 3'- aaUGUGACCUUgGCCGG-----CGGUa---CAac -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 148022 | 0.68 | 0.83013 |
Target: 5'- ---gGCgGGAGCCGccGCCGCCGcugcUGUUGg -3' miRNA: 3'- aaugUGaCCUUGGC--CGGCGGU----ACAAC- -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 130831 | 0.7 | 0.736227 |
Target: 5'- cUGCAUUGGGACuCGGCgGCCggGg-- -3' miRNA: 3'- aAUGUGACCUUG-GCCGgCGGuaCaac -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 115084 | 0.68 | 0.870563 |
Target: 5'- -cGC-CUGGGGCCGGCCcagcccguccCCGUGUUc -3' miRNA: 3'- aaUGuGACCUUGGCCGGc---------GGUACAAc -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 113996 | 0.66 | 0.934105 |
Target: 5'- -gACGCcgcGGAugACCGGCCGCaCcgGggGg -3' miRNA: 3'- aaUGUGa--CCU--UGGCCGGCG-GuaCaaC- -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 112230 | 0.66 | 0.939093 |
Target: 5'- aUAC-CUGGAcaaCGGCCGCC-UGg-- -3' miRNA: 3'- aAUGuGACCUug-GCCGGCGGuACaac -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 108856 | 0.73 | 0.601344 |
Target: 5'- -gGCugUGGuuCCGGCCGCCAg---- -3' miRNA: 3'- aaUGugACCuuGGCCGGCGGUacaac -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 103100 | 0.66 | 0.917633 |
Target: 5'- -gGCGCUcgauaucgacggGGAGCuCGGCCGCCugcAUGgcGg -3' miRNA: 3'- aaUGUGA------------CCUUG-GCCGGCGG---UACaaC- -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 102666 | 0.66 | 0.911641 |
Target: 5'- -gGCGCUGGcccacauacAGCCGGCCGCaCGc---- -3' miRNA: 3'- aaUGUGACC---------UUGGCCGGCG-GUacaac -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 102487 | 0.66 | 0.911641 |
Target: 5'- gUACugUGG--CCGGCCGCCcucgGUc- -3' miRNA: 3'- aAUGugACCuuGGCCGGCGGua--CAac -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 90850 | 0.67 | 0.898911 |
Target: 5'- -----gUGGGACCcGCCGCCGUGg-- -3' miRNA: 3'- aaugugACCUUGGcCGGCGGUACaac -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 77719 | 0.66 | 0.939093 |
Target: 5'- -cACcCUGGAGUCGGCCucgaccgucacgGCCAUGUa- -3' miRNA: 3'- aaUGuGACCUUGGCCGG------------CGGUACAac -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 76274 | 0.75 | 0.479525 |
Target: 5'- -gGCGCUGGAcCUGGCCGCCGc---- -3' miRNA: 3'- aaUGUGACCUuGGCCGGCGGUacaac -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 70511 | 0.66 | 0.933593 |
Target: 5'- -cGC-CUGGGGCCcuGGCCccccgagGCCAUGggGg -3' miRNA: 3'- aaUGuGACCUUGG--CCGG-------CGGUACaaC- -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 70132 | 0.74 | 0.539273 |
Target: 5'- -cGCGCUGaucacccuccucGAACCGGCCGCCcgGg-- -3' miRNA: 3'- aaUGUGAC------------CUUGGCCGGCGGuaCaac -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 68592 | 0.69 | 0.798036 |
Target: 5'- -gGCcCUGGGGCCGGUccgcguccgccagugCGCCGUGgagUGg -3' miRNA: 3'- aaUGuGACCUUGGCCG---------------GCGGUACa--AC- -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 68558 | 0.68 | 0.846925 |
Target: 5'- aUGCGCUGGAuuccGCCGGCCuGCgCAc---- -3' miRNA: 3'- aAUGUGACCU----UGGCCGG-CG-GUacaac -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 68076 | 0.67 | 0.883071 |
Target: 5'- cUACGCUGucccccacccacgcGAGCCGGgCGUCAUGg-- -3' miRNA: 3'- aAUGUGAC--------------CUUGGCCgGCGGUACaac -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 65672 | 0.7 | 0.775479 |
Target: 5'- cUGCGCUGGGgccGCCGGCCuCC-UGUc- -3' miRNA: 3'- aAUGUGACCU---UGGCCGGcGGuACAac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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