miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5784 3' -52.3 NC_001806.1 + 28752 1.11 0.005035
Target:  5'- gGAAGAAGAGGGGUCGGGAUCCAAAGGa -3'
miRNA:   3'- -CUUCUUCUCCCCAGCCCUAGGUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 67699 0.85 0.207416
Target:  5'- gGAGGGAGGGGGGggGGGGUCgAAAGGa -3'
miRNA:   3'- -CUUCUUCUCCCCagCCCUAGgUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 95372 0.79 0.428852
Target:  5'- gGAAGggGcacGGGGGUUGGGAgcucCCGGGGGc -3'
miRNA:   3'- -CUUCuuC---UCCCCAGCCCUa---GGUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 147220 0.79 0.456574
Target:  5'- gGAAGAGGcggcccccgcGGGGGUCGGGG-CCGAGGa -3'
miRNA:   3'- -CUUCUUC----------UCCCCAGCCCUaGGUUUCc -5'
5784 3' -52.3 NC_001806.1 + 10389 0.78 0.485232
Target:  5'- cGggGggGcGGGGGgaggCGGGAgCCGGGGGg -3'
miRNA:   3'- -CuuCuuC-UCCCCa---GCCCUaGGUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 6547 0.78 0.504805
Target:  5'- cGGAGGAGGGGGGacgCGGGGg-CGGAGGa -3'
miRNA:   3'- -CUUCUUCUCCCCa--GCCCUagGUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 6503 0.78 0.504805
Target:  5'- cGGAGGAGGGGGGacgCGGGGg-CGGAGGa -3'
miRNA:   3'- -CUUCUUCUCCCCa--GCCCUagGUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 6459 0.78 0.504805
Target:  5'- cGGAGGAGGGGGGacgCGGGGg-CGGAGGa -3'
miRNA:   3'- -CUUCUUCUCCCCa--GCCCUagGUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 2860 0.78 0.52471
Target:  5'- cGGGGAGGGGGGcgCGGGcGUCCGAgccGGGg -3'
miRNA:   3'- cUUCUUCUCCCCa-GCCC-UAGGUU---UCC- -5'
5784 3' -52.3 NC_001806.1 + 6414 0.76 0.606759
Target:  5'- cGGAGGAGGGGGGgacgCGGGGguggaGGAGGg -3'
miRNA:   3'- -CUUCUUCUCCCCa---GCCCUagg--UUUCC- -5'
5784 3' -52.3 NC_001806.1 + 31369 0.76 0.606759
Target:  5'- uGggGAgGGGGGGGUCGGGcgCUggGuGGu -3'
miRNA:   3'- -CuuCU-UCUCCCCAGCCCuaGGuuU-CC- -5'
5784 3' -52.3 NC_001806.1 + 34789 0.76 0.61718
Target:  5'- gGggGggGGGGGGgggCGGGAaaCCAAguAGGc -3'
miRNA:   3'- -CuuCuuCUCCCCa--GCCCUa-GGUU--UCC- -5'
5784 3' -52.3 NC_001806.1 + 29647 0.75 0.658896
Target:  5'- gGAGGAGGAGGGGggGGGAg--GGAGGa -3'
miRNA:   3'- -CUUCUUCUCCCCagCCCUaggUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 4418 0.74 0.710465
Target:  5'- cGGAGAGGGGGGGUggccCGGGcgggggcggcGUCCGcccGGGGg -3'
miRNA:   3'- -CUUCUUCUCCCCA----GCCC----------UAGGU---UUCC- -5'
5784 3' -52.3 NC_001806.1 + 25242 0.74 0.720609
Target:  5'- aGggGgcGAGGGG-CGGGAgggggCGAGGGg -3'
miRNA:   3'- -CuuCuuCUCCCCaGCCCUag---GUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 25208 0.74 0.720609
Target:  5'- aGggGgcGAGGGG-CGGGAgggggCGAGGGg -3'
miRNA:   3'- -CuuCuuCUCCCCaGCCCUag---GUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 25174 0.74 0.720609
Target:  5'- aGggGgcGAGGGG-CGGGAgggggCGAGGGg -3'
miRNA:   3'- -CuuCuuCUCCCCaGCCCUag---GUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 25140 0.74 0.720609
Target:  5'- aGggGgcGAGGGG-CGGGAgggggCGAGGGg -3'
miRNA:   3'- -CuuCuuCUCCCCaGCCCUag---GUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 25106 0.74 0.720609
Target:  5'- aGggGgcGAGGGG-CGGGAgggggCGAGGGg -3'
miRNA:   3'- -CuuCuuCUCCCCaGCCCUag---GUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 25276 0.74 0.720609
Target:  5'- aGggGgcGAGGGG-CGGGAgggggCGAGGGg -3'
miRNA:   3'- -CuuCuuCUCCCCaGCCCUag---GUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.