miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5784 3' -52.3 NC_001806.1 + 1491 0.67 0.973815
Target:  5'- -cAGcGGGGGGGcgucgucgUCGGGcUCCAGcAGGg -3'
miRNA:   3'- cuUCuUCUCCCC--------AGCCCuAGGUU-UCC- -5'
5784 3' -52.3 NC_001806.1 + 2860 0.78 0.52471
Target:  5'- cGGGGAGGGGGGcgCGGGcGUCCGAgccGGGg -3'
miRNA:   3'- cUUCUUCUCCCCa-GCCC-UAGGUU---UCC- -5'
5784 3' -52.3 NC_001806.1 + 3316 0.67 0.976421
Target:  5'- cGggGAAGcGGGGcccgCGGGucccUCCGGccgcGGGg -3'
miRNA:   3'- -CuuCUUCuCCCCa---GCCCu---AGGUU----UCC- -5'
5784 3' -52.3 NC_001806.1 + 4418 0.74 0.710465
Target:  5'- cGGAGAGGGGGGGUggccCGGGcgggggcggcGUCCGcccGGGGg -3'
miRNA:   3'- -CUUCUUCUCCCCA----GCCC----------UAGGU---UUCC- -5'
5784 3' -52.3 NC_001806.1 + 4836 0.68 0.949538
Target:  5'- cGAGGccGcGGGGUCGGGcgucgggaucGUCCGGAcGGc -3'
miRNA:   3'- -CUUCuuCuCCCCAGCCC----------UAGGUUU-CC- -5'
5784 3' -52.3 NC_001806.1 + 4988 0.69 0.913589
Target:  5'- cGAGucguGGGGGuGGUCGGGGUCguGgucGGGg -3'
miRNA:   3'- cUUCu---UCUCC-CCAGCCCUAGguU---UCC- -5'
5784 3' -52.3 NC_001806.1 + 6414 0.76 0.606759
Target:  5'- cGGAGGAGGGGGGgacgCGGGGguggaGGAGGg -3'
miRNA:   3'- -CUUCUUCUCCCCa---GCCCUagg--UUUCC- -5'
5784 3' -52.3 NC_001806.1 + 6459 0.78 0.504805
Target:  5'- cGGAGGAGGGGGGacgCGGGGg-CGGAGGa -3'
miRNA:   3'- -CUUCUUCUCCCCa--GCCCUagGUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 6503 0.78 0.504805
Target:  5'- cGGAGGAGGGGGGacgCGGGGg-CGGAGGa -3'
miRNA:   3'- -CUUCUUCUCCCCa--GCCCUagGUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 6547 0.78 0.504805
Target:  5'- cGGAGGAGGGGGGacgCGGGGg-CGGAGGa -3'
miRNA:   3'- -CUUCUUCUCCCCa--GCCCUagGUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 9135 0.67 0.973544
Target:  5'- cAGGGAGGGGGcGUCGacagccuGGAgggCCAucGGg -3'
miRNA:   3'- cUUCUUCUCCC-CAGC-------CCUa--GGUuuCC- -5'
5784 3' -52.3 NC_001806.1 + 9510 0.7 0.887632
Target:  5'- -uGGuGGAGGGagaGUCGGGucucUCCGGGGGg -3'
miRNA:   3'- cuUCuUCUCCC---CAGCCCu---AGGUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 10389 0.78 0.485232
Target:  5'- cGggGggGcGGGGGgaggCGGGAgCCGGGGGg -3'
miRNA:   3'- -CuuCuuC-UCCCCa---GCCCUaGGUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 11304 0.74 0.720609
Target:  5'- aGggGAGGcguuGGGGUgggugucgUGGGGUCCAcGGGg -3'
miRNA:   3'- -CuuCUUCu---CCCCA--------GCCCUAGGUuUCC- -5'
5784 3' -52.3 NC_001806.1 + 11792 0.7 0.887632
Target:  5'- cGAGGGAGcGGGGaUGGuGGUCgAGGGGg -3'
miRNA:   3'- -CUUCUUCuCCCCaGCC-CUAGgUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 14222 0.68 0.945592
Target:  5'- gGggGggGGGGGGgaaauuauacgacaaCuGGGUCCAuguAGGg -3'
miRNA:   3'- -CuuCuuCUCCCCa--------------GcCCUAGGUu--UCC- -5'
5784 3' -52.3 NC_001806.1 + 20989 0.73 0.769952
Target:  5'- cGAcGgcGGGGGucGUCGGGGUCCGuGGGu -3'
miRNA:   3'- -CUuCuuCUCCC--CAGCCCUAGGUuUCC- -5'
5784 3' -52.3 NC_001806.1 + 25106 0.74 0.720609
Target:  5'- aGggGgcGAGGGG-CGGGAgggggCGAGGGg -3'
miRNA:   3'- -CuuCuuCUCCCCaGCCCUag---GUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 25140 0.74 0.720609
Target:  5'- aGggGgcGAGGGG-CGGGAgggggCGAGGGg -3'
miRNA:   3'- -CuuCuuCUCCCCaGCCCUag---GUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 25174 0.74 0.720609
Target:  5'- aGggGgcGAGGGG-CGGGAgggggCGAGGGg -3'
miRNA:   3'- -CuuCuuCUCCCCaGCCCUag---GUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.