miRNA display CGI


Results 21 - 40 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 3' -53.3 NC_001806.1 + 9698 0.77 0.456526
Target:  5'- cACACCGACaACC-CCAgUgcaGACAGCAGCa -3'
miRNA:   3'- -UGUGGUUG-UGGuGGUgG---UUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 4621 0.77 0.467006
Target:  5'- gACGCCgAugGCCGCCACCGGCcgugacgacgucuccGCGGCg -3'
miRNA:   3'- -UGUGG-UugUGGUGGUGGUUGu--------------CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 130813 0.77 0.47181
Target:  5'- aGCACCAugGCCGCgCGCCugcauugggacuCGGCGGCc -3'
miRNA:   3'- -UGUGGUugUGGUG-GUGGuu----------GUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 1369 0.77 0.473739
Target:  5'- aGCACCuccacggccccCGCCGCCGCCAGCAcGguGCc -3'
miRNA:   3'- -UGUGGuu---------GUGGUGGUGGUUGU-CguCG- -5'
5788 3' -53.3 NC_001806.1 + 126140 0.77 0.475672
Target:  5'- gGCGgCGAgGCCGgCGCCGACAcGCGGCg -3'
miRNA:   3'- -UGUgGUUgUGGUgGUGGUUGU-CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 76487 0.76 0.494223
Target:  5'- -gGCCGAUACCAaggaCGCCGuggugcgcgccaaACAGCAGCg -3'
miRNA:   3'- ugUGGUUGUGGUg---GUGGU-------------UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 27273 0.76 0.505113
Target:  5'- -gGCCAAUcgGCgGCCGCCAGC-GCGGCg -3'
miRNA:   3'- ugUGGUUG--UGgUGGUGGUUGuCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 85717 0.76 0.505113
Target:  5'- aGCGCCGGCAcCCACCGCCccgAACccuGCGGUc -3'
miRNA:   3'- -UGUGGUUGU-GGUGGUGG---UUGu--CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 23035 0.76 0.52517
Target:  5'- uGCGCgGGgACCugCgcgugGCCGGCGGCAGCg -3'
miRNA:   3'- -UGUGgUUgUGGugG-----UGGUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 103001 0.75 0.535311
Target:  5'- cGCGCgCGGCAuCCGCCucuUCGGCGGCGGCc -3'
miRNA:   3'- -UGUG-GUUGU-GGUGGu--GGUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 113501 0.75 0.545521
Target:  5'- uUACCuGCugCagGCCGCCAuacACGGCAGCg -3'
miRNA:   3'- uGUGGuUGugG--UGGUGGU---UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 100139 0.75 0.545521
Target:  5'- -gGCUAugGCCcCCACCAAC-GCGGCu -3'
miRNA:   3'- ugUGGUugUGGuGGUGGUUGuCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 24812 0.75 0.550649
Target:  5'- cCGCCGGCGCCGCCcgggauucgcuggGCCucggccacgggccGCAGCGGCa -3'
miRNA:   3'- uGUGGUUGUGGUGG-------------UGGu------------UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 28975 0.75 0.555792
Target:  5'- -gACCGAgACCugC-CgGACAGCAGCg -3'
miRNA:   3'- ugUGGUUgUGGugGuGgUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 92355 0.75 0.555792
Target:  5'- -gGCCAGacgGCCcCCGCCGAgAGCAGCu -3'
miRNA:   3'- ugUGGUUg--UGGuGGUGGUUgUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 79315 0.75 0.566119
Target:  5'- uCACCGACGCCACCcCCGGCG--AGCc -3'
miRNA:   3'- uGUGGUUGUGGUGGuGGUUGUcgUCG- -5'
5788 3' -53.3 NC_001806.1 + 23724 0.75 0.566119
Target:  5'- uGCGCCGGgccCGCCcCCGCCGcccaggccgcguGCGGCGGCg -3'
miRNA:   3'- -UGUGGUU---GUGGuGGUGGU------------UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 3239 0.75 0.566119
Target:  5'- aGCACCAGCGCguCGCgCACgAACcGCAGCu -3'
miRNA:   3'- -UGUGGUUGUG--GUG-GUGgUUGuCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 12429 0.75 0.566119
Target:  5'- cCACgAGCACCAggcCCugCAACGgGCGGCa -3'
miRNA:   3'- uGUGgUUGUGGU---GGugGUUGU-CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 31454 0.75 0.576495
Target:  5'- gACACgGGCACCACaCACCAGCGGg--- -3'
miRNA:   3'- -UGUGgUUGUGGUG-GUGGUUGUCgucg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.