Results 1 - 20 of 341 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5788 | 3' | -53.3 | NC_001806.1 | + | 29909 | 1.12 | 0.002748 |
Target: 5'- aACACCAACACCACCACCAACAGCAGCg -3' miRNA: 3'- -UGUGGUUGUGGUGGUGGUUGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 81730 | 0.87 | 0.12219 |
Target: 5'- cGCGCCAGCACCaACCACCcaccaAAUAGCGGCc -3' miRNA: 3'- -UGUGGUUGUGG-UGGUGG-----UUGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 98350 | 0.85 | 0.159225 |
Target: 5'- cGCGCCGACAUCACCACCGuCAGCAc- -3' miRNA: 3'- -UGUGGUUGUGGUGGUGGUuGUCGUcg -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 114368 | 0.83 | 0.227978 |
Target: 5'- gGCGCCAACACCgcguccACCACCAACAuGC-GCa -3' miRNA: 3'- -UGUGGUUGUGG------UGGUGGUUGU-CGuCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 56834 | 0.82 | 0.245652 |
Target: 5'- cCGCCAACACCGCCgcgGCCAggGCGGCcGCg -3' miRNA: 3'- uGUGGUUGUGGUGG---UGGU--UGUCGuCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 63023 | 0.82 | 0.251791 |
Target: 5'- aACGCaCAGCGCguugcuggucuuCAUCGCCGACAGCAGCa -3' miRNA: 3'- -UGUG-GUUGUG------------GUGGUGGUUGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 75169 | 0.81 | 0.270968 |
Target: 5'- aACGCCGGCAgCGCCGCCGucgcaACGGCAGa -3' miRNA: 3'- -UGUGGUUGUgGUGGUGGU-----UGUCGUCg -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 50549 | 0.81 | 0.284394 |
Target: 5'- cGCGCCGGCugC-UCGCCAACAGCGGg -3' miRNA: 3'- -UGUGGUUGugGuGGUGGUUGUCGUCg -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 75637 | 0.81 | 0.296214 |
Target: 5'- cGCGCCGACgaacuugaggccGCCACCGCCGACcucagagagaagauGGCGGCc -3' miRNA: 3'- -UGUGGUUG------------UGGUGGUGGUUG--------------UCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 3034 | 0.81 | 0.29834 |
Target: 5'- uGCGCUGGcCGCCGCCGCCAGCAGgGGg -3' miRNA: 3'- -UGUGGUU-GUGGUGGUGGUUGUCgUCg -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 122845 | 0.8 | 0.320242 |
Target: 5'- uGCGCCGGCACCagGCUAUUaAACAGCAGCc -3' miRNA: 3'- -UGUGGUUGUGG--UGGUGG-UUGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 144212 | 0.8 | 0.327044 |
Target: 5'- cCGCCGACACCGCagaGCCGGCgcgcgcacucacaAGCGGCa -3' miRNA: 3'- uGUGGUUGUGGUGg--UGGUUG-------------UCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 34665 | 0.78 | 0.393001 |
Target: 5'- cCACCAcCACCACCACCGACAccucccGC-GCa -3' miRNA: 3'- uGUGGUuGUGGUGGUGGUUGU------CGuCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 98011 | 0.78 | 0.401721 |
Target: 5'- aACGCCAuCGCCucgGCCACCGugGGcCGGCg -3' miRNA: 3'- -UGUGGUuGUGG---UGGUGGUugUC-GUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 113102 | 0.78 | 0.410564 |
Target: 5'- -gGCCGGCcCCGCCGCagacauGCAGCAGCu -3' miRNA: 3'- ugUGGUUGuGGUGGUGgu----UGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 24409 | 0.78 | 0.419527 |
Target: 5'- cGCGCCGccgcuGCGCCugUGCCG-CGGCGGCa -3' miRNA: 3'- -UGUGGU-----UGUGGugGUGGUuGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 38616 | 0.78 | 0.428607 |
Target: 5'- gGCugC-ACACCACCACCGGCcgGGUGGUg -3' miRNA: 3'- -UGugGuUGUGGUGGUGGUUG--UCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 101137 | 0.77 | 0.44711 |
Target: 5'- -gGCCAGCACCcgccCCACCucGCAGcCAGCg -3' miRNA: 3'- ugUGGUUGUGGu---GGUGGu-UGUC-GUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 132454 | 0.77 | 0.44711 |
Target: 5'- cGCGCCGGCGCUcgucGCCcuuuuCCGGCAGUGGCa -3' miRNA: 3'- -UGUGGUUGUGG----UGGu----GGUUGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 77363 | 0.77 | 0.45558 |
Target: 5'- uACGCCAAgGCCACagGCCAgacgggcgcgggcGCGGCGGCc -3' miRNA: 3'- -UGUGGUUgUGGUGg-UGGU-------------UGUCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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