miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 3' -53.3 NC_001806.1 + 32982 0.66 0.95124
Target:  5'- cCGCCGGgGCCccgggccggGCCGCC-ACGGgGGCc -3'
miRNA:   3'- uGUGGUUgUGG---------UGGUGGuUGUCgUCG- -5'
5788 3' -53.3 NC_001806.1 + 53854 0.66 0.959178
Target:  5'- gACGCguGCgACgGCgGCCAGCuguuuGGCAGCc -3'
miRNA:   3'- -UGUGguUG-UGgUGgUGGUUG-----UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 23554 0.66 0.959178
Target:  5'- gGCGgCAGCcCCcgggGCCcaGCCAcACGGCGGCg -3'
miRNA:   3'- -UGUgGUUGuGG----UGG--UGGU-UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 82584 0.66 0.95124
Target:  5'- cCACCAAaggguucgcgaACCGucCCGcCCAACAGCAcGCg -3'
miRNA:   3'- uGUGGUUg----------UGGU--GGU-GGUUGUCGU-CG- -5'
5788 3' -53.3 NC_001806.1 + 97348 0.66 0.95124
Target:  5'- cGCGCgCGACcUCACCACCAaggcccgggccACGGC-GCc -3'
miRNA:   3'- -UGUG-GUUGuGGUGGUGGU-----------UGUCGuCG- -5'
5788 3' -53.3 NC_001806.1 + 89338 0.66 0.955328
Target:  5'- gACAgCGGgcCGCCGCCACCGgaaaACAucGCGGUu -3'
miRNA:   3'- -UGUgGUU--GUGGUGGUGGU----UGU--CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 146216 0.66 0.95124
Target:  5'- aACACCAGaGCCugC-CCAACA-UGGCa -3'
miRNA:   3'- -UGUGGUUgUGGugGuGGUUGUcGUCG- -5'
5788 3' -53.3 NC_001806.1 + 77270 0.66 0.955328
Target:  5'- gACGCgGugGCCggggaccugGCC-CCAugGGCGGUg -3'
miRNA:   3'- -UGUGgUugUGG---------UGGuGGUugUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 1419 0.66 0.952904
Target:  5'- -gGCCGAgGCCcagcgaaucccgggcGgCGCCGGCGGCAGg -3'
miRNA:   3'- ugUGGUUgUGG---------------UgGUGGUUGUCGUCg -5'
5788 3' -53.3 NC_001806.1 + 148131 0.66 0.949537
Target:  5'- gGCugCGugagACGCC-CCGCCcgucacggggggcGCGGCGGCg -3'
miRNA:   3'- -UGugGU----UGUGGuGGUGGu------------UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 100894 0.66 0.95124
Target:  5'- cGCGCaCAGCGCgACgugCGCgAACAGCGuGCg -3'
miRNA:   3'- -UGUG-GUUGUGgUG---GUGgUUGUCGU-CG- -5'
5788 3' -53.3 NC_001806.1 + 22411 0.66 0.955328
Target:  5'- uACGCCAugGCgGCCGgCCGcuuCGGCuggGGCc -3'
miRNA:   3'- -UGUGGUugUGgUGGU-GGUu--GUCG---UCG- -5'
5788 3' -53.3 NC_001806.1 + 124233 0.66 0.955328
Target:  5'- cGCGCCGGC-CgCACC-CaCAACAuccGCGGCu -3'
miRNA:   3'- -UGUGGUUGuG-GUGGuG-GUUGU---CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 14265 0.66 0.955328
Target:  5'- gAUGgUAACGCCcCCACCcGCGGCAcGUa -3'
miRNA:   3'- -UGUgGUUGUGGuGGUGGuUGUCGU-CG- -5'
5788 3' -53.3 NC_001806.1 + 79475 0.66 0.955328
Target:  5'- uGCACCGcgGCCcCCuggGCCGGCAGUcacGGCu -3'
miRNA:   3'- -UGUGGUugUGGuGG---UGGUUGUCG---UCG- -5'
5788 3' -53.3 NC_001806.1 + 147763 0.66 0.969341
Target:  5'- --cCCGACGCgGCCGCgGAC-GCGGg -3'
miRNA:   3'- uguGGUUGUGgUGGUGgUUGuCGUCg -5'
5788 3' -53.3 NC_001806.1 + 35852 0.66 0.95124
Target:  5'- cGCGCgAGCugUACagggcCCAACGcGCGGCg -3'
miRNA:   3'- -UGUGgUUGugGUGgu---GGUUGU-CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 64901 0.66 0.95124
Target:  5'- -gACCAGCGCCgGCCuCUGGCGuCGGCg -3'
miRNA:   3'- ugUGGUUGUGG-UGGuGGUUGUcGUCG- -5'
5788 3' -53.3 NC_001806.1 + 138794 0.66 0.955328
Target:  5'- -gGCCGACGCaggCGCCcCCGGCgAGCGuGCg -3'
miRNA:   3'- ugUGGUUGUG---GUGGuGGUUG-UCGU-CG- -5'
5788 3' -53.3 NC_001806.1 + 106336 0.66 0.956897
Target:  5'- -gGCCGcgugauACACCGCCcccCCGACcgccgguuggggcccGGCGGCa -3'
miRNA:   3'- ugUGGU------UGUGGUGGu--GGUUG---------------UCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.