miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 3' -53.3 NC_001806.1 + 572 0.71 0.791051
Target:  5'- cACACCGcuccugcuacACACCACCGCCcccucccCAGCcccAGCc -3'
miRNA:   3'- -UGUGGU----------UGUGGUGGUGGuu-----GUCG---UCG- -5'
5788 3' -53.3 NC_001806.1 + 1369 0.77 0.473739
Target:  5'- aGCACCuccacggccccCGCCGCCGCCAGCAcGguGCc -3'
miRNA:   3'- -UGUGGuu---------GUGGUGGUGGUUGU-CguCG- -5'
5788 3' -53.3 NC_001806.1 + 1419 0.66 0.952904
Target:  5'- -gGCCGAgGCCcagcgaaucccgggcGgCGCCGGCGGCAGg -3'
miRNA:   3'- ugUGGUUgUGG---------------UgGUGGUUGUCGUCg -5'
5788 3' -53.3 NC_001806.1 + 1549 0.69 0.882806
Target:  5'- -gGCCcGCGCCACCggGCCGGgcCGGCGcGCa -3'
miRNA:   3'- ugUGGuUGUGGUGG--UGGUU--GUCGU-CG- -5'
5788 3' -53.3 NC_001806.1 + 1588 0.75 0.586912
Target:  5'- cGCcCCAGCGCCACguaCACgGgccGCAGCGGCg -3'
miRNA:   3'- -UGuGGUUGUGGUG---GUGgU---UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 1735 0.73 0.649867
Target:  5'- aGCGCCGGCAgCACgGCC--CGGCGGUa -3'
miRNA:   3'- -UGUGGUUGUgGUGgUGGuuGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 1817 0.73 0.670825
Target:  5'- aGCGCaCGuuGCCGCCGCggcacaggcgCAGCGGCGGCg -3'
miRNA:   3'- -UGUG-GUugUGGUGGUG----------GUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 1919 0.69 0.867984
Target:  5'- gGC-CCGAgGCCAgCACCGu--GCGGCg -3'
miRNA:   3'- -UGuGGUUgUGGUgGUGGUuguCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 1966 0.74 0.639361
Target:  5'- cGCACgGcgcACugCACgGCgGGCAGCAGCu -3'
miRNA:   3'- -UGUGgU---UGugGUGgUGgUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 2081 0.73 0.670825
Target:  5'- cCGCCGGuCGCCGgCGCUGGCgAGCAGCc -3'
miRNA:   3'- uGUGGUU-GUGGUgGUGGUUG-UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 2123 0.67 0.9271
Target:  5'- gGCcCCGGCgaagGCCAggucCCGCguggaCAGCAGCAGCa -3'
miRNA:   3'- -UGuGGUUG----UGGU----GGUG-----GUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 2178 0.68 0.921518
Target:  5'- aGCGCCGACACgucgggggCGCCGguCCAAUugcccgcccaGGCGGCc -3'
miRNA:   3'- -UGUGGUUGUG--------GUGGU--GGUUG----------UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 2249 0.69 0.852268
Target:  5'- -gGCCAGgGCCGCCAgCAgGCAGgaCAGCc -3'
miRNA:   3'- ugUGGUUgUGGUGGUgGU-UGUC--GUCG- -5'
5788 3' -53.3 NC_001806.1 + 2315 0.73 0.66978
Target:  5'- -gGCCc-CGCCGCCGgccagguccucgcCCGGCAGCGGCg -3'
miRNA:   3'- ugUGGuuGUGGUGGU-------------GGUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 2397 0.69 0.87551
Target:  5'- cGCAUCcAgGCCGCCAUgCGGC-GCAGCg -3'
miRNA:   3'- -UGUGGuUgUGGUGGUG-GUUGuCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 2484 0.67 0.942332
Target:  5'- uUAUCGucgucguCGCCGCCGCCG-CAcGCGGCc -3'
miRNA:   3'- uGUGGUu------GUGGUGGUGGUuGU-CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 2767 0.74 0.597364
Target:  5'- gGCGCgGGCggGCCugCGCCG-CGGCGGCc -3'
miRNA:   3'- -UGUGgUUG--UGGugGUGGUuGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 2998 0.71 0.791051
Target:  5'- gGCGgCGGCgGCCGCCAgCGcguCGGCGGCg -3'
miRNA:   3'- -UGUgGUUG-UGGUGGUgGUu--GUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 3034 0.81 0.29834
Target:  5'- uGCGCUGGcCGCCGCCGCCAGCAGgGGg -3'
miRNA:   3'- -UGUGGUU-GUGGUGGUGGUUGUCgUCg -5'
5788 3' -53.3 NC_001806.1 + 3172 0.67 0.9271
Target:  5'- gGCGC--GCACgGCgGCC-ACGGCGGCc -3'
miRNA:   3'- -UGUGguUGUGgUGgUGGuUGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.