miRNA display CGI


Results 21 - 40 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 3' -53.3 NC_001806.1 + 3239 0.75 0.566119
Target:  5'- aGCACCAGCGCguCGCgCACgAACcGCAGCu -3'
miRNA:   3'- -UGUGGUUGUG--GUG-GUGgUUGuCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 3415 0.71 0.791051
Target:  5'- -gGCCAGCGCCuCCAggauCCcGCGGCAGg -3'
miRNA:   3'- ugUGGUUGUGGuGGU----GGuUGUCGUCg -5'
5788 3' -53.3 NC_001806.1 + 3559 0.66 0.962792
Target:  5'- -gGCgGACAgCCGCC-CCAG-GGCGGCg -3'
miRNA:   3'- ugUGgUUGU-GGUGGuGGUUgUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 3595 0.74 0.618341
Target:  5'- gGCGCCGuacccggcggGCACCGCgCGCUcgcccggugcGGCGGCGGCg -3'
miRNA:   3'- -UGUGGU----------UGUGGUG-GUGG----------UUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 3696 0.72 0.712265
Target:  5'- cCGUCAGCGCCGCguucucgcgCGCCAACAGgGGCg -3'
miRNA:   3'- uGUGGUUGUGGUG---------GUGGUUGUCgUCG- -5'
5788 3' -53.3 NC_001806.1 + 3807 0.69 0.87551
Target:  5'- cCGCCGcguGCGCCagGCC-CCAGCcgaAGCGGCc -3'
miRNA:   3'- uGUGGU---UGUGG--UGGuGGUUG---UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 4063 0.68 0.915685
Target:  5'- gGCGCCcACACgGCCGCCGG-GGC-GCc -3'
miRNA:   3'- -UGUGGuUGUGgUGGUGGUUgUCGuCG- -5'
5788 3' -53.3 NC_001806.1 + 4284 0.68 0.915685
Target:  5'- cCGCCGGgGCUGCCcgGCCGugAaGCGGCc -3'
miRNA:   3'- uGUGGUUgUGGUGG--UGGUugU-CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 4325 0.74 0.597364
Target:  5'- -gGCCGGcCACCGCCGCgCGGgccCGGCGGCg -3'
miRNA:   3'- ugUGGUU-GUGGUGGUG-GUU---GUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 4464 0.67 0.94186
Target:  5'- -uGCCGGCGCCGcgcucgacggaccCCGCCcGACGGCccGCg -3'
miRNA:   3'- ugUGGUUGUGGU-------------GGUGG-UUGUCGu-CG- -5'
5788 3' -53.3 NC_001806.1 + 4621 0.77 0.467006
Target:  5'- gACGCCgAugGCCGCCACCGGCcgugacgacgucuccGCGGCg -3'
miRNA:   3'- -UGUGG-UugUGGUGGUGGUUGu--------------CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 4746 0.66 0.959178
Target:  5'- -gGCCGGgGCCcggUCGCCGGCGGCgucGGCu -3'
miRNA:   3'- ugUGGUUgUGGu--GGUGGUUGUCG---UCG- -5'
5788 3' -53.3 NC_001806.1 + 5142 0.72 0.732592
Target:  5'- --uCCGACGCCAUCGCCGAUGcGgGGCg -3'
miRNA:   3'- uguGGUUGUGGUGGUGGUUGU-CgUCG- -5'
5788 3' -53.3 NC_001806.1 + 5643 0.7 0.827136
Target:  5'- cCAUCcGCGCCAUCuGCCAugGGCGGg -3'
miRNA:   3'- uGUGGuUGUGGUGG-UGGUugUCGUCg -5'
5788 3' -53.3 NC_001806.1 + 5866 0.68 0.915685
Target:  5'- cCGCCgGACGCCGggACCAACGGgaCGGCg -3'
miRNA:   3'- uGUGG-UUGUGGUggUGGUUGUC--GUCG- -5'
5788 3' -53.3 NC_001806.1 + 6050 0.66 0.969341
Target:  5'- gGCGCCGugcccgacuccGCGCCgGCC-CCGGgGGCGGg -3'
miRNA:   3'- -UGUGGU-----------UGUGG-UGGuGGUUgUCGUCg -5'
5788 3' -53.3 NC_001806.1 + 6134 0.69 0.880641
Target:  5'- cGCgACCGACGCCcgcagacggcgccgGCCACgaaCGACGGgAGCg -3'
miRNA:   3'- -UG-UGGUUGUGG--------------UGGUG---GUUGUCgUCG- -5'
5788 3' -53.3 NC_001806.1 + 8764 0.67 0.942332
Target:  5'- uGCGUCGACGCCuuaaUACCGACuguuGGCGGCc -3'
miRNA:   3'- -UGUGGUUGUGGug--GUGGUUG----UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 9291 0.68 0.915685
Target:  5'- --uCCGACGuCCACCucGCCGGCGGUcGCc -3'
miRNA:   3'- uguGGUUGU-GGUGG--UGGUUGUCGuCG- -5'
5788 3' -53.3 NC_001806.1 + 9661 0.72 0.72247
Target:  5'- cCGCCAggcACGCCugCGCCAACAGg--- -3'
miRNA:   3'- uGUGGU---UGUGGugGUGGUUGUCgucg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.