miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 5' -63.9 NC_001806.1 + 125849 0.66 0.58717
Target:  5'- gGGCcCCCgGCC-GcCGCGGacGCCGUGGc -3'
miRNA:   3'- gCCGaGGG-CGGuCaGCGCU--CGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 21872 0.66 0.568179
Target:  5'- gCGGCgaggaccCCCGCgGccucCGCGGGCCGCa- -3'
miRNA:   3'- -GCCGa------GGGCGgUca--GCGCUCGGCGcc -5'
5788 5' -63.9 NC_001806.1 + 65241 0.66 0.568179
Target:  5'- gCGGCg-CCGUguGUCGCGAcaggaacaacaGCCGCc- -3'
miRNA:   3'- -GCCGagGGCGguCAGCGCU-----------CGGCGcc -5'
5788 5' -63.9 NC_001806.1 + 109392 0.66 0.590983
Target:  5'- cCGaC-CCCGCCcccgacccggcgaugGGUCGUGGGgCGCGGc -3'
miRNA:   3'- -GCcGaGGGCGG---------------UCAGCGCUCgGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 30208 0.66 0.615855
Target:  5'- uCGGgaCCCGCgCGccccCGCGcGGCCGUGGc -3'
miRNA:   3'- -GCCgaGGGCG-GUca--GCGC-UCGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 21585 0.66 0.606275
Target:  5'- -cGCgCCCGCCGGcccaGCc-GCCGCGGa -3'
miRNA:   3'- gcCGaGGGCGGUCag--CGcuCGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 26680 0.66 0.596711
Target:  5'- cCGGC-CCCGgcccccaccgcCCGG-CGUGGGCC-CGGg -3'
miRNA:   3'- -GCCGaGGGC-----------GGUCaGCGCUCGGcGCC- -5'
5788 5' -63.9 NC_001806.1 + 50864 0.66 0.557799
Target:  5'- aCGcGCgcaccaccCCCGCCaAGUucugggcggacucCGCGcGGCCGCGGa -3'
miRNA:   3'- -GC-CGa-------GGGCGG-UCA-------------GCGC-UCGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 100111 0.66 0.55874
Target:  5'- cCGGCUgaccgCCCGCC--UgGCGGuCCGCGGc -3'
miRNA:   3'- -GCCGA-----GGGCGGucAgCGCUcGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 80010 0.67 0.521481
Target:  5'- gGGUUCCCGUag---GCGGGCCGCa- -3'
miRNA:   3'- gCCGAGGGCGgucagCGCUCGGCGcc -5'
5788 5' -63.9 NC_001806.1 + 21138 0.67 0.530712
Target:  5'- cCGGCUCCCcggGCCccacCGaCGGGCCGCc- -3'
miRNA:   3'- -GCCGAGGG---CGGuca-GC-GCUCGGCGcc -5'
5788 5' -63.9 NC_001806.1 + 135063 0.67 0.530712
Target:  5'- cCGGC-CCCGCgGGgacgCGcCGGGCCGgaaauCGGc -3'
miRNA:   3'- -GCCGaGGGCGgUCa---GC-GCUCGGC-----GCC- -5'
5788 5' -63.9 NC_001806.1 + 19180 0.67 0.530712
Target:  5'- ---aUCCCGCCgaucgggagAGcUCGUGAGCCGCaGGu -3'
miRNA:   3'- gccgAGGGCGG---------UC-AGCGCUCGGCG-CC- -5'
5788 5' -63.9 NC_001806.1 + 148009 0.67 0.512312
Target:  5'- gCGGCUCgCGaCUGG-CGgGAGCCGCc- -3'
miRNA:   3'- -GCCGAGgGC-GGUCaGCgCUCGGCGcc -5'
5788 5' -63.9 NC_001806.1 + 147672 0.67 0.503211
Target:  5'- cCGGCUCCgCcCCGGggGcCGGGgCGCGGg -3'
miRNA:   3'- -GCCGAGG-GcGGUCagC-GCUCgGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 4737 0.67 0.540002
Target:  5'- gCGGC-CCCGggccggggcCCGGUCGCcGGCgGCGu -3'
miRNA:   3'- -GCCGaGGGC---------GGUCAGCGcUCGgCGCc -5'
5788 5' -63.9 NC_001806.1 + 41158 0.67 0.549346
Target:  5'- gGGauaUgCGUCGGgguccaCGCGGGCCGCGGg -3'
miRNA:   3'- gCCga-GgGCGGUCa-----GCGCUCGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 84847 0.67 0.521481
Target:  5'- aCGGCaaggagCgCCGgCGGUCGCGcuccucugcGGCCgGCGGg -3'
miRNA:   3'- -GCCGa-----G-GGCgGUCAGCGC---------UCGG-CGCC- -5'
5788 5' -63.9 NC_001806.1 + 65395 0.67 0.540002
Target:  5'- aCGGCggUCCCGCC-GUCGCu-GCCGg-- -3'
miRNA:   3'- -GCCG--AGGGCGGuCAGCGcuCGGCgcc -5'
5788 5' -63.9 NC_001806.1 + 11268 0.67 0.512312
Target:  5'- gGuGCUCCCgGCCAGU----GGCCGUGGa -3'
miRNA:   3'- gC-CGAGGG-CGGUCAgcgcUCGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.