miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 5' -63.9 NC_001806.1 + 41983 0.66 0.559682
Target:  5'- aCGGcCUCCCuGcCCAGgggcgagggcugcucCGUGcuGGCCGCGGg -3'
miRNA:   3'- -GCC-GAGGG-C-GGUCa--------------GCGC--UCGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 21926 0.66 0.596711
Target:  5'- gCGGCggUgGCCGGcCGCGAcGCCaCGGg -3'
miRNA:   3'- -GCCGagGgCGGUCaGCGCU-CGGcGCC- -5'
5788 5' -63.9 NC_001806.1 + 9759 0.66 0.568179
Target:  5'- gGGCg-CCGUgGGUUGgGGGCgCGUGGg -3'
miRNA:   3'- gCCGagGGCGgUCAGCgCUCG-GCGCC- -5'
5788 5' -63.9 NC_001806.1 + 21740 0.66 0.577657
Target:  5'- gCGGCcgaCCaCGCacgcgaGG-CGCGGGCCGuCGGg -3'
miRNA:   3'- -GCCGa--GG-GCGg-----UCaGCGCUCGGC-GCC- -5'
5788 5' -63.9 NC_001806.1 + 65241 0.66 0.568179
Target:  5'- gCGGCg-CCGUguGUCGCGAcaggaacaacaGCCGCc- -3'
miRNA:   3'- -GCCGagGGCGguCAGCGCU-----------CGGCGcc -5'
5788 5' -63.9 NC_001806.1 + 73040 0.66 0.55874
Target:  5'- aGGCaaaaCCC-CC-GUCG-GGGCCGCGGu -3'
miRNA:   3'- gCCGa---GGGcGGuCAGCgCUCGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 109392 0.66 0.590983
Target:  5'- cCGaC-CCCGCCcccgacccggcgaugGGUCGUGGGgCGCGGc -3'
miRNA:   3'- -GCcGaGGGCGG---------------UCAGCGCUCgGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 100111 0.66 0.55874
Target:  5'- cCGGCUgaccgCCCGCC--UgGCGGuCCGCGGc -3'
miRNA:   3'- -GCCGA-----GGGCGGucAgCGCUcGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 5401 0.66 0.586217
Target:  5'- uGGCggUCCCGCgucgGGUCGUGgauccgugucggcAGCCGCGc -3'
miRNA:   3'- gCCG--AGGGCGg---UCAGCGC-------------UCGGCGCc -5'
5788 5' -63.9 NC_001806.1 + 74187 0.66 0.55874
Target:  5'- uGGCUUCgGCCGccGUCGUGc-CCGUGGu -3'
miRNA:   3'- gCCGAGGgCGGU--CAGCGCucGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 15697 0.66 0.55874
Target:  5'- gCGGgUCCagGCCGGUCGgGuGUacgGCGGg -3'
miRNA:   3'- -GCCgAGGg-CGGUCAGCgCuCGg--CGCC- -5'
5788 5' -63.9 NC_001806.1 + 9178 0.66 0.568179
Target:  5'- aCGGCcguguagCCCGggGGUCGCGGGUguggcgagggCGCGGu -3'
miRNA:   3'- -GCCGa------GGGCggUCAGCGCUCG----------GCGCC- -5'
5788 5' -63.9 NC_001806.1 + 50864 0.66 0.557799
Target:  5'- aCGcGCgcaccaccCCCGCCaAGUucugggcggacucCGCGcGGCCGCGGa -3'
miRNA:   3'- -GC-CGa-------GGGCGG-UCA-------------GCGC-UCGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 151342 0.66 0.593846
Target:  5'- gGGCugUCCgGCCAGUCGuCGucaucgucgucgucGGaCGCGGa -3'
miRNA:   3'- gCCG--AGGgCGGUCAGC-GC--------------UCgGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 2890 0.66 0.592891
Target:  5'- gGGCgUCCgCGCCGcucuucuucgucuUCGgGGGUCGCGGg -3'
miRNA:   3'- gCCG-AGG-GCGGUc------------AGCgCUCGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 21872 0.66 0.568179
Target:  5'- gCGGCgaggaccCCCGCgGccucCGCGGGCCGCa- -3'
miRNA:   3'- -GCCGa------GGGCGgUca--GCGCUCGGCGcc -5'
5788 5' -63.9 NC_001806.1 + 88958 0.66 0.576708
Target:  5'- gGGCguggUCCaCGCCgccccacAGgCGCGAgcGCCGCGGc -3'
miRNA:   3'- gCCG----AGG-GCGG-------UCaGCGCU--CGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 120682 0.66 0.58717
Target:  5'- uCGGaC-CCCGUCg--CGCGGGCCGCu- -3'
miRNA:   3'- -GCC-GaGGGCGGucaGCGCUCGGCGcc -5'
5788 5' -63.9 NC_001806.1 + 147170 0.66 0.596711
Target:  5'- aCGGC-CCCGCCcgaGGagGCG-GaaGCGGa -3'
miRNA:   3'- -GCCGaGGGCGG---UCagCGCuCggCGCC- -5'
5788 5' -63.9 NC_001806.1 + 30208 0.66 0.615855
Target:  5'- uCGGgaCCCGCgCGccccCGCGcGGCCGUGGc -3'
miRNA:   3'- -GCCgaGGGCG-GUca--GCGC-UCGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.