Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5788 | 5' | -63.9 | NC_001806.1 | + | 29942 | 1.08 | 0.000752 |
Target: 5'- gCGGCUCCCGCCAGUCGCGAGCCGCGGc -3' miRNA: 3'- -GCCGAGGGCGGUCAGCGCUCGGCGCC- -5' |
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5788 | 5' | -63.9 | NC_001806.1 | + | 24693 | 0.79 | 0.096525 |
Target: 5'- cCGGC-CCgGcCCGGUggCGCGGGCCGCGGa -3' miRNA: 3'- -GCCGaGGgC-GGUCA--GCGCUCGGCGCC- -5' |
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5788 | 5' | -63.9 | NC_001806.1 | + | 93873 | 0.76 | 0.164889 |
Target: 5'- cCGGCU--UGCCGGUCgGCGGGCcCGCGGg -3' miRNA: 3'- -GCCGAggGCGGUCAG-CGCUCG-GCGCC- -5' |
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5788 | 5' | -63.9 | NC_001806.1 | + | 4961 | 0.75 | 0.168456 |
Target: 5'- gGGCccucccgUCCCGCCGggcGUCGuCGAGUCGUGGg -3' miRNA: 3'- gCCG-------AGGGCGGU---CAGC-GCUCGGCGCC- -5' |
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5788 | 5' | -63.9 | NC_001806.1 | + | 96459 | 0.75 | 0.171685 |
Target: 5'- gCGGCUCCgaguucccccggcaCGCCuggGGUCGCG-GCCGCGa -3' miRNA: 3'- -GCCGAGG--------------GCGG---UCAGCGCuCGGCGCc -5' |
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5788 | 5' | -63.9 | NC_001806.1 | + | 102433 | 0.75 | 0.181277 |
Target: 5'- gCGGCcCCCGCCGGcCGCGAaCUGCGu -3' miRNA: 3'- -GCCGaGGGCGGUCaGCGCUcGGCGCc -5' |
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5788 | 5' | -63.9 | NC_001806.1 | + | 119188 | 0.74 | 0.208556 |
Target: 5'- uGGCgccgccgcCCCGCCGGcCGCGAaggagGCUGCGGc -3' miRNA: 3'- gCCGa-------GGGCGGUCaGCGCU-----CGGCGCC- -5' |
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5788 | 5' | -63.9 | NC_001806.1 | + | 67612 | 0.74 | 0.218409 |
Target: 5'- aCGGUacUCCCGCCccacacggaaggGGUUGCGGGuaGCGGa -3' miRNA: 3'- -GCCG--AGGGCGG------------UCAGCGCUCggCGCC- -5' |
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5788 | 5' | -63.9 | NC_001806.1 | + | 22648 | 0.74 | 0.223483 |
Target: 5'- gCGGUgCCCGCCGGguaCGGcGCCGCGGg -3' miRNA: 3'- -GCCGaGGGCGGUCagcGCU-CGGCGCC- -5' |
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5788 | 5' | -63.9 | NC_001806.1 | + | 86656 | 0.73 | 0.228656 |
Target: 5'- aCGGCcgucagCCCGgCGGcCGUGAgGCCGCGGc -3' miRNA: 3'- -GCCGa-----GGGCgGUCaGCGCU-CGGCGCC- -5' |
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5788 | 5' | -63.9 | NC_001806.1 | + | 11649 | 0.73 | 0.228656 |
Target: 5'- uGGgUCaCCGUUAGcgcguaUCGCGAGUCGCGGg -3' miRNA: 3'- gCCgAG-GGCGGUC------AGCGCUCGGCGCC- -5' |
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5788 | 5' | -63.9 | NC_001806.1 | + | 43277 | 0.73 | 0.239307 |
Target: 5'- gCGGCcgUUCCGCCcucGGagGCgGAGCCGCGGc -3' miRNA: 3'- -GCCG--AGGGCGG---UCagCG-CUCGGCGCC- -5' |
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5788 | 5' | -63.9 | NC_001806.1 | + | 107034 | 0.73 | 0.256057 |
Target: 5'- uGGCcgCCCGCgGGgcCGCGGgcuguGCCGCGGa -3' miRNA: 3'- gCCGa-GGGCGgUCa-GCGCU-----CGGCGCC- -5' |
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5788 | 5' | -63.9 | NC_001806.1 | + | 96612 | 0.73 | 0.256057 |
Target: 5'- cCGcGC-CCCGCCGGcgacaaCGCGAccgucGCCGCGGg -3' miRNA: 3'- -GC-CGaGGGCGGUCa-----GCGCU-----CGGCGCC- -5' |
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5788 | 5' | -63.9 | NC_001806.1 | + | 26956 | 0.72 | 0.26775 |
Target: 5'- uCGGCcgCCCGCC--UgGCGcGCCGCGGc -3' miRNA: 3'- -GCCGa-GGGCGGucAgCGCuCGGCGCC- -5' |
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5788 | 5' | -63.9 | NC_001806.1 | + | 22966 | 0.72 | 0.273756 |
Target: 5'- aCGcGC-CCCGCCugcgcgcguGGcugCGCGAGCUGCGGu -3' miRNA: 3'- -GC-CGaGGGCGG---------UCa--GCGCUCGGCGCC- -5' |
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5788 | 5' | -63.9 | NC_001806.1 | + | 57731 | 0.72 | 0.27987 |
Target: 5'- aCGGCUUCCGCUccGGgCGUcugGAGCgGCGGg -3' miRNA: 3'- -GCCGAGGGCGG--UCaGCG---CUCGgCGCC- -5' |
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5788 | 5' | -63.9 | NC_001806.1 | + | 103509 | 0.71 | 0.312068 |
Target: 5'- uGGCUCCCGCCGGaUCcaaaUGAGUcuucggaccuCGCGGg -3' miRNA: 3'- gCCGAGGGCGGUC-AGc---GCUCG----------GCGCC- -5' |
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5788 | 5' | -63.9 | NC_001806.1 | + | 3323 | 0.71 | 0.325712 |
Target: 5'- gCGGggCCCGCgGGUCccucCG-GCCGCGGg -3' miRNA: 3'- -GCCgaGGGCGgUCAGc---GCuCGGCGCC- -5' |
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5788 | 5' | -63.9 | NC_001806.1 | + | 52531 | 0.71 | 0.339795 |
Target: 5'- uGGCgUCUCGCCGGacgaCGUGGuCCGCGGg -3' miRNA: 3'- gCCG-AGGGCGGUCa---GCGCUcGGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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