miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 5' -63.9 NC_001806.1 + 2702 0.69 0.428221
Target:  5'- gGGCUgCCGCCgccagccgcccagggGGUCG-GGGCCcucgGCGGg -3'
miRNA:   3'- gCCGAgGGCGG---------------UCAGCgCUCGG----CGCC- -5'
5788 5' -63.9 NC_001806.1 + 2890 0.66 0.592891
Target:  5'- gGGCgUCCgCGCCGcucuucuucgucuUCGgGGGUCGCGGg -3'
miRNA:   3'- gCCG-AGG-GCGGUc------------AGCgCUCGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 3002 0.7 0.384643
Target:  5'- gCGGCggCCGCCAG-CGCGucGGCgGCGu -3'
miRNA:   3'- -GCCGagGGCGGUCaGCGC--UCGgCGCc -5'
5788 5' -63.9 NC_001806.1 + 3323 0.71 0.325712
Target:  5'- gCGGggCCCGCgGGUCccucCG-GCCGCGGg -3'
miRNA:   3'- -GCCgaGGGCGgUCAGc---GCuCGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 4208 0.69 0.433241
Target:  5'- aCGGCUcCCCGCUGacguacccGUCGCGAuaGCgCGCGu -3'
miRNA:   3'- -GCCGA-GGGCGGU--------CAGCGCU--CG-GCGCc -5'
5788 5' -63.9 NC_001806.1 + 4327 0.7 0.384643
Target:  5'- cCGGC-CaCCGCCg--CGCGGGCCcgGCGGc -3'
miRNA:   3'- -GCCGaG-GGCGGucaGCGCUCGG--CGCC- -5'
5788 5' -63.9 NC_001806.1 + 4737 0.67 0.540002
Target:  5'- gCGGC-CCCGggccggggcCCGGUCGCcGGCgGCGu -3'
miRNA:   3'- -GCCGaGGGC---------GGUCAGCGcUCGgCGCc -5'
5788 5' -63.9 NC_001806.1 + 4927 0.7 0.354314
Target:  5'- cCGGCgUCCuCGCCGG-CGuCGGugcccGCCGCGGn -3'
miRNA:   3'- -GCCG-AGG-GCGGUCaGC-GCU-----CGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 4961 0.75 0.168456
Target:  5'- gGGCccucccgUCCCGCCGggcGUCGuCGAGUCGUGGg -3'
miRNA:   3'- gCCG-------AGGGCGGU---CAGC-GCUCGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 5059 0.66 0.606275
Target:  5'- gGGCccCCCGCUcGUCGCGgucugGGCuCGgGGu -3'
miRNA:   3'- gCCGa-GGGCGGuCAGCGC-----UCG-GCgCC- -5'
5788 5' -63.9 NC_001806.1 + 5095 0.68 0.458841
Target:  5'- gCGGCggCCCGUCGGUggggcccgGgGAGCCGgGGc -3'
miRNA:   3'- -GCCGa-GGGCGGUCAg-------CgCUCGGCgCC- -5'
5788 5' -63.9 NC_001806.1 + 5401 0.66 0.586217
Target:  5'- uGGCggUCCCGCgucgGGUCGUGgauccgugucggcAGCCGCGc -3'
miRNA:   3'- gCCG--AGGGCGg---UCAGCGC-------------UCGGCGCc -5'
5788 5' -63.9 NC_001806.1 + 5589 0.67 0.530712
Target:  5'- cCGGCa--CGCCGGgggccCGUG-GCCGCGGc -3'
miRNA:   3'- -GCCGaggGCGGUCa----GCGCuCGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 9178 0.66 0.568179
Target:  5'- aCGGCcguguagCCCGggGGUCGCGGGUguggcgagggCGCGGu -3'
miRNA:   3'- -GCCGa------GGGCggUCAGCGCUCG----------GCGCC- -5'
5788 5' -63.9 NC_001806.1 + 9759 0.66 0.568179
Target:  5'- gGGCg-CCGUgGGUUGgGGGCgCGUGGg -3'
miRNA:   3'- gCCGagGGCGgUCAGCgCUCG-GCGCC- -5'
5788 5' -63.9 NC_001806.1 + 10121 0.66 0.615855
Target:  5'- aCGGCgcgUCgGCCGGggacagacauUCuGgGAGCUGCGGg -3'
miRNA:   3'- -GCCGa--GGgCGGUC----------AG-CgCUCGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 11268 0.67 0.512312
Target:  5'- gGuGCUCCCgGCCAGU----GGCCGUGGa -3'
miRNA:   3'- gC-CGAGGG-CGGUCAgcgcUCGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 11649 0.73 0.228656
Target:  5'- uGGgUCaCCGUUAGcgcguaUCGCGAGUCGCGGg -3'
miRNA:   3'- gCCgAG-GGCGGUC------AGCGCUCGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 15697 0.66 0.55874
Target:  5'- gCGGgUCCagGCCGGUCGgGuGUacgGCGGg -3'
miRNA:   3'- -GCCgAGGg-CGGUCAGCgCuCGg--CGCC- -5'
5788 5' -63.9 NC_001806.1 + 19180 0.67 0.530712
Target:  5'- ---aUCCCGCCgaucgggagAGcUCGUGAGCCGCaGGu -3'
miRNA:   3'- gccgAGGGCGG---------UC-AGCGCUCGGCG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.