miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 5' -63.9 NC_001806.1 + 20715 0.68 0.450217
Target:  5'- gGGUgggCCCGCCGGgggggCgGgGGGCCgGCGGc -3'
miRNA:   3'- gCCGa--GGGCGGUCa----G-CgCUCGG-CGCC- -5'
5788 5' -63.9 NC_001806.1 + 21138 0.67 0.530712
Target:  5'- cCGGCUCCCcggGCCccacCGaCGGGCCGCc- -3'
miRNA:   3'- -GCCGAGGG---CGGuca-GC-GCUCGGCGcc -5'
5788 5' -63.9 NC_001806.1 + 21585 0.66 0.606275
Target:  5'- -cGCgCCCGCCGGcccaGCc-GCCGCGGa -3'
miRNA:   3'- gcCGaGGGCGGUCag--CGcuCGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 21740 0.66 0.577657
Target:  5'- gCGGCcgaCCaCGCacgcgaGG-CGCGGGCCGuCGGg -3'
miRNA:   3'- -GCCGa--GG-GCGg-----UCaGCGCUCGGC-GCC- -5'
5788 5' -63.9 NC_001806.1 + 21872 0.66 0.568179
Target:  5'- gCGGCgaggaccCCCGCgGccucCGCGGGCCGCa- -3'
miRNA:   3'- -GCCGa------GGGCGgUca--GCGCUCGGCGcc -5'
5788 5' -63.9 NC_001806.1 + 21926 0.66 0.596711
Target:  5'- gCGGCggUgGCCGGcCGCGAcGCCaCGGg -3'
miRNA:   3'- -GCCGagGgCGGUCaGCGCU-CGGcGCC- -5'
5788 5' -63.9 NC_001806.1 + 22648 0.74 0.223483
Target:  5'- gCGGUgCCCGCCGGguaCGGcGCCGCGGg -3'
miRNA:   3'- -GCCGaGGGCGGUCagcGCU-CGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 22895 0.69 0.441683
Target:  5'- gGGCccggCCCGCCAGcccccCGCG-GCCGgaGGg -3'
miRNA:   3'- gCCGa---GGGCGGUCa----GCGCuCGGCg-CC- -5'
5788 5' -63.9 NC_001806.1 + 22966 0.72 0.273756
Target:  5'- aCGcGC-CCCGCCugcgcgcguGGcugCGCGAGCUGCGGu -3'
miRNA:   3'- -GC-CGaGGGCGG---------UCa--GCGCUCGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 23253 0.66 0.606275
Target:  5'- gCGGC-CgCCGCCGccucCGcCGcGCCGCGGg -3'
miRNA:   3'- -GCCGaG-GGCGGUca--GC-GCuCGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 23730 0.67 0.549346
Target:  5'- gGGCccgccCCCGCCgcccaGGcCGCGuGCgGCGGc -3'
miRNA:   3'- gCCGa----GGGCGG-----UCaGCGCuCGgCGCC- -5'
5788 5' -63.9 NC_001806.1 + 24693 0.79 0.096525
Target:  5'- cCGGC-CCgGcCCGGUggCGCGGGCCGCGGa -3'
miRNA:   3'- -GCCGaGGgC-GGUCA--GCGCUCGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 26680 0.66 0.596711
Target:  5'- cCGGC-CCCGgcccccaccgcCCGG-CGUGGGCC-CGGg -3'
miRNA:   3'- -GCCGaGGGC-----------GGUCaGCGCUCGGcGCC- -5'
5788 5' -63.9 NC_001806.1 + 26956 0.72 0.26775
Target:  5'- uCGGCcgCCCGCC--UgGCGcGCCGCGGc -3'
miRNA:   3'- -GCCGa-GGGCGGucAgCGCuCGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 27279 0.69 0.416643
Target:  5'- uCGGCggCCGCCAG-CGCGgcggGGCC-CGGc -3'
miRNA:   3'- -GCCGagGGCGGUCaGCGC----UCGGcGCC- -5'
5788 5' -63.9 NC_001806.1 + 29942 1.08 0.000752
Target:  5'- gCGGCUCCCGCCAGUCGCGAGCCGCGGc -3'
miRNA:   3'- -GCCGAGGGCGGUCAGCGCUCGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 30208 0.66 0.615855
Target:  5'- uCGGgaCCCGCgCGccccCGCGcGGCCGUGGc -3'
miRNA:   3'- -GCCgaGGGCG-GUca--GCGC-UCGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 30301 0.69 0.424894
Target:  5'- cCGGCcgCCCGCCccgcGGaCGCGcGCCGUGu -3'
miRNA:   3'- -GCCGa-GGGCGG----UCaGCGCuCGGCGCc -5'
5788 5' -63.9 NC_001806.1 + 30842 0.68 0.494181
Target:  5'- uCGGCcCCCGCgCuGcUUcUGGGCCGCGGg -3'
miRNA:   3'- -GCCGaGGGCG-GuC-AGcGCUCGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 31090 0.68 0.458841
Target:  5'- uGGCgaCCCGgC---UGCGGGCCGCGGu -3'
miRNA:   3'- gCCGa-GGGCgGucaGCGCUCGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.