miRNA display CGI


Results 21 - 40 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5791 3' -67.7 NC_001806.1 + 145922 0.66 0.395845
Target:  5'- uCUCCCCCcccccCACcccuccgCCCCaCCCCCCAacacccacgucuguGGUg -3'
miRNA:   3'- -GAGGGGGc----GUGa------GGGG-GGGGGGU--------------CCG- -5'
5791 3' -67.7 NC_001806.1 + 55259 0.66 0.414097
Target:  5'- -gCgCCCGgGCcggCCCCCuCCgCCCAGaGCa -3'
miRNA:   3'- gaGgGGGCgUGa--GGGGG-GG-GGGUC-CG- -5'
5791 3' -67.7 NC_001806.1 + 57875 0.66 0.422192
Target:  5'- -gUCCgCGCGCcaUCCUCgCCCCCCGaGCg -3'
miRNA:   3'- gaGGGgGCGUG--AGGGG-GGGGGGUcCG- -5'
5791 3' -67.7 NC_001806.1 + 26513 0.66 0.422192
Target:  5'- --gCCCCGC-CgCCgCCCCCCgCCgguGGGCc -3'
miRNA:   3'- gagGGGGCGuGaGG-GGGGGG-GG---UCCG- -5'
5791 3' -67.7 NC_001806.1 + 150203 0.66 0.395845
Target:  5'- gUCCCCCaaagaaccccauuaGCAUgCCCCUCCCgCCgacgcaacagGGGCu -3'
miRNA:   3'- gAGGGGG--------------CGUGaGGGGGGGG-GG----------UCCG- -5'
5791 3' -67.7 NC_001806.1 + 1539 0.66 0.414097
Target:  5'- gUCCCuCCGCGg-CCCgCgCCaCCGGGCc -3'
miRNA:   3'- gAGGG-GGCGUgaGGGgGgGG-GGUCCG- -5'
5791 3' -67.7 NC_001806.1 + 26852 0.66 0.398196
Target:  5'- -cCCCCCGCGa-CCCCCgcgaCCCCC--GCg -3'
miRNA:   3'- gaGGGGGCGUgaGGGGG----GGGGGucCG- -5'
5791 3' -67.7 NC_001806.1 + 149221 0.66 0.430382
Target:  5'- uUCCCUCuu-CUCCCgCCCUCCAGacGCa -3'
miRNA:   3'- gAGGGGGcguGAGGGgGGGGGGUC--CG- -5'
5791 3' -67.7 NC_001806.1 + 21135 0.66 0.398196
Target:  5'- --gCCCCG-GCUCCCCgggCCCCaccgaCGGGCc -3'
miRNA:   3'- gagGGGGCgUGAGGGG---GGGGg----GUCCG- -5'
5791 3' -67.7 NC_001806.1 + 46065 0.66 0.398196
Target:  5'- gUCCCCCGgACgcggcgUCCCgUUUCCgGGGCg -3'
miRNA:   3'- gAGGGGGCgUG------AGGGgGGGGGgUCCG- -5'
5791 3' -67.7 NC_001806.1 + 30119 0.66 0.390394
Target:  5'- aCUCCCCCcCGg-CCUCUCCCCaCAGGn -3'
miRNA:   3'- -GAGGGGGcGUgaGGGGGGGGG-GUCCg -5'
5791 3' -67.7 NC_001806.1 + 5517 0.66 0.382692
Target:  5'- -gCCgCCG-GCcCCCCgCCCCCCcGGCg -3'
miRNA:   3'- gaGGgGGCgUGaGGGG-GGGGGGuCCG- -5'
5791 3' -67.7 NC_001806.1 + 97795 0.67 0.360202
Target:  5'- -gCCCCCaaaccCACgCCCCCgCCgCCCGGGg -3'
miRNA:   3'- gaGGGGGc----GUGaGGGGG-GG-GGGUCCg -5'
5791 3' -67.7 NC_001806.1 + 2963 0.67 0.367595
Target:  5'- -aCUCuuGCGCUugCgCCCCUCCCGcGGCg -3'
miRNA:   3'- gaGGGggCGUGA--GgGGGGGGGGU-CCG- -5'
5791 3' -67.7 NC_001806.1 + 148352 0.67 0.360202
Target:  5'- -cCCCCCGC-CUCaCCgUCgUCCAGGUc -3'
miRNA:   3'- gaGGGGGCGuGAG-GGgGGgGGGUCCG- -5'
5791 3' -67.7 NC_001806.1 + 123959 0.67 0.360202
Target:  5'- aUCCCaggcggcguuaaCCGCAC-CCCCCucguCCCCCucGCa -3'
miRNA:   3'- gAGGG------------GGCGUGaGGGGG----GGGGGucCG- -5'
5791 3' -67.7 NC_001806.1 + 73095 0.67 0.360202
Target:  5'- -gCCUCgGCAC-CCCCCgaCCCggCCGGGCc -3'
miRNA:   3'- gaGGGGgCGUGaGGGGG--GGG--GGUCCG- -5'
5791 3' -67.7 NC_001806.1 + 67874 0.67 0.360202
Target:  5'- gUCCgggcugCCCGCACaUCCggacaaUCCCCCGGGCc -3'
miRNA:   3'- gAGG------GGGCGUG-AGGgg----GGGGGGUCCG- -5'
5791 3' -67.7 NC_001806.1 + 57301 0.67 0.360202
Target:  5'- -aCCCCCGCGCcagggCCCCCacgcaCgCgAGGUg -3'
miRNA:   3'- gaGGGGGCGUGa----GGGGGg----GgGgUCCG- -5'
5791 3' -67.7 NC_001806.1 + 697 0.67 0.367595
Target:  5'- cCUCCCCgGC-C-CCagCCCUCCCC-GGCc -3'
miRNA:   3'- -GAGGGGgCGuGaGG--GGGGGGGGuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.