miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5791 3' -67.7 NC_001806.1 + 21135 0.66 0.398196
Target:  5'- --gCCCCG-GCUCCCCgggCCCCaccgaCGGGCc -3'
miRNA:   3'- gagGGGGCgUGAGGGG---GGGGg----GUCCG- -5'
5791 3' -67.7 NC_001806.1 + 81932 0.66 0.406097
Target:  5'- cCUCggCCCCGUACgCCUCCCgggaCCgCCGGGUu -3'
miRNA:   3'- -GAG--GGGGCGUGaGGGGGG----GG-GGUCCG- -5'
5791 3' -67.7 NC_001806.1 + 67133 0.66 0.430382
Target:  5'- ---aCCCGCucucgGCUCgCCCCgaCCCCAGGg -3'
miRNA:   3'- gaggGGGCG-----UGAG-GGGGg-GGGGUCCg -5'
5791 3' -67.7 NC_001806.1 + 65647 0.66 0.390394
Target:  5'- -gCCCCgGCGg--CCUCCCCCUGGGUg -3'
miRNA:   3'- gaGGGGgCGUgagGGGGGGGGGUCCG- -5'
5791 3' -67.7 NC_001806.1 + 26852 0.66 0.398196
Target:  5'- -cCCCCCGCGa-CCCCCgcgaCCCCC--GCg -3'
miRNA:   3'- gaGGGGGCGUgaGGGGG----GGGGGucCG- -5'
5791 3' -67.7 NC_001806.1 + 46065 0.66 0.398196
Target:  5'- gUCCCCCGgACgcggcgUCCCgUUUCCgGGGCg -3'
miRNA:   3'- gAGGGGGCgUG------AGGGgGGGGGgUCCG- -5'
5791 3' -67.7 NC_001806.1 + 81459 0.66 0.382692
Target:  5'- -aCUCCCGCACggCCCCUUgggugCCCUGGGg -3'
miRNA:   3'- gaGGGGGCGUGa-GGGGGG-----GGGGUCCg -5'
5791 3' -67.7 NC_001806.1 + 150203 0.66 0.395845
Target:  5'- gUCCCCCaaagaaccccauuaGCAUgCCCCUCCCgCCgacgcaacagGGGCu -3'
miRNA:   3'- gAGGGGG--------------CGUGaGGGGGGGG-GG----------UCCG- -5'
5791 3' -67.7 NC_001806.1 + 79642 0.66 0.413293
Target:  5'- cCUCCuCCCGCGCUUCUgCCgCUucuucguCCGGGUc -3'
miRNA:   3'- -GAGG-GGGCGUGAGGGgGG-GG-------GGUCCG- -5'
5791 3' -67.7 NC_001806.1 + 28806 0.66 0.382692
Target:  5'- -aCCCCUuu-CUCCCCCCUcuuCCgAGGCc -3'
miRNA:   3'- gaGGGGGcguGAGGGGGGG---GGgUCCG- -5'
5791 3' -67.7 NC_001806.1 + 101569 0.66 0.406097
Target:  5'- uCUCCCUaaUGC-C-CCCUCCCCCCucGCc -3'
miRNA:   3'- -GAGGGG--GCGuGaGGGGGGGGGGucCG- -5'
5791 3' -67.7 NC_001806.1 + 144120 0.66 0.398196
Target:  5'- -cCCCCUGC-CUUCCaCCCUCC-GGCc -3'
miRNA:   3'- gaGGGGGCGuGAGGGgGGGGGGuCCG- -5'
5791 3' -67.7 NC_001806.1 + 115007 0.66 0.382692
Target:  5'- -aCCUgggCCGCgggGCUCCCCCUCUCCuGGa -3'
miRNA:   3'- gaGGG---GGCG---UGAGGGGGGGGGGuCCg -5'
5791 3' -67.7 NC_001806.1 + 6824 0.66 0.406097
Target:  5'- gUCCCCUGC--UgCgCUCUCCCGGGCu -3'
miRNA:   3'- gAGGGGGCGugAgGgGGGGGGGUCCG- -5'
5791 3' -67.7 NC_001806.1 + 145922 0.66 0.395845
Target:  5'- uCUCCCCCcccccCACcccuccgCCCCaCCCCCCAacacccacgucuguGGUg -3'
miRNA:   3'- -GAGGGGGc----GUGa------GGGG-GGGGGGU--------------CCG- -5'
5791 3' -67.7 NC_001806.1 + 55259 0.66 0.414097
Target:  5'- -gCgCCCGgGCcggCCCCCuCCgCCCAGaGCa -3'
miRNA:   3'- gaGgGGGCgUGa--GGGGG-GG-GGGUC-CG- -5'
5791 3' -67.7 NC_001806.1 + 47226 0.66 0.382692
Target:  5'- -aCCCCgGCGg-CCCCCCCgCUguacgcaacgGGGCg -3'
miRNA:   3'- gaGGGGgCGUgaGGGGGGGgGG----------UCCG- -5'
5791 3' -67.7 NC_001806.1 + 96520 0.66 0.381928
Target:  5'- --gCCCUGcCACUCCggcgccgCCCgCCCCuGGCg -3'
miRNA:   3'- gagGGGGC-GUGAGG-------GGGgGGGGuCCG- -5'
5791 3' -67.7 NC_001806.1 + 5517 0.66 0.382692
Target:  5'- -gCCgCCG-GCcCCCCgCCCCCCcGGCg -3'
miRNA:   3'- gaGGgGGCgUGaGGGG-GGGGGGuCCG- -5'
5791 3' -67.7 NC_001806.1 + 131546 0.66 0.398196
Target:  5'- -aCCCCaaaaACcgCCCCCCCCCCGucaccGGUu -3'
miRNA:   3'- gaGGGGgcg-UGa-GGGGGGGGGGU-----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.