miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5791 3' -67.7 NC_001806.1 + 67133 0.66 0.430382
Target:  5'- ---aCCCGCucucgGCUCgCCCCgaCCCCAGGg -3'
miRNA:   3'- gaggGGGCG-----UGAG-GGGGg-GGGGUCCg -5'
5791 3' -67.7 NC_001806.1 + 17118 0.76 0.082437
Target:  5'- -cCCCCCGUAaaucaccCUCCCCUCCCCCGGacGCc -3'
miRNA:   3'- gaGGGGGCGU-------GAGGGGGGGGGGUC--CG- -5'
5791 3' -67.7 NC_001806.1 + 19829 0.76 0.084697
Target:  5'- -gCCCCCGCG-UCCCCCCCUCCuccgcccacccaAGGUg -3'
miRNA:   3'- gaGGGGGCGUgAGGGGGGGGGG------------UCCG- -5'
5791 3' -67.7 NC_001806.1 + 4112 0.76 0.086802
Target:  5'- cCUCCUCCGCcucggGCgCCCCCCagaggCCCGGGCg -3'
miRNA:   3'- -GAGGGGGCG-----UGaGGGGGGg----GGGUCCG- -5'
5791 3' -67.7 NC_001806.1 + 74015 0.76 0.091164
Target:  5'- --gCUCCGCGC-CCaCCCCCCCUGGGCc -3'
miRNA:   3'- gagGGGGCGUGaGG-GGGGGGGGUCCG- -5'
5791 3' -67.7 NC_001806.1 + 23647 0.75 0.095734
Target:  5'- -aCCaCCCGCugUUCCCCgUCCCCuGGCg -3'
miRNA:   3'- gaGG-GGGCGugAGGGGG-GGGGGuCCG- -5'
5791 3' -67.7 NC_001806.1 + 85 0.75 0.10553
Target:  5'- cCUCCCCC-CGCUCCUCCCCCCg---- -3'
miRNA:   3'- -GAGGGGGcGUGAGGGGGGGGGguccg -5'
5791 3' -67.7 NC_001806.1 + 109 0.75 0.10553
Target:  5'- cCUCCCCC-CGCUCCUCCCCCCg---- -3'
miRNA:   3'- -GAGGGGGcGUGAGGGGGGGGGguccg -5'
5791 3' -67.7 NC_001806.1 + 133 0.75 0.10553
Target:  5'- cCUCCCCC-CGCUCCUCCCCCCg---- -3'
miRNA:   3'- -GAGGGGGcGUGAGGGGGGGGGguccg -5'
5791 3' -67.7 NC_001806.1 + 30773 0.77 0.073051
Target:  5'- cCUCCUCCGC-UUCCgCCUCCUCGGGCg -3'
miRNA:   3'- -GAGGGGGCGuGAGGgGGGGGGGUCCG- -5'
5791 3' -67.7 NC_001806.1 + 21803 0.77 0.073051
Target:  5'- -gCCCCCGgGCggacgCCgCCCCCgCCCGGGCc -3'
miRNA:   3'- gaGGGGGCgUGa----GG-GGGGG-GGGUCCG- -5'
5791 3' -67.7 NC_001806.1 + 120807 0.77 0.070214
Target:  5'- -gCCCCCGCcucugggguuugccCUCCCCCCgCCCCcGGCa -3'
miRNA:   3'- gaGGGGGCGu-------------GAGGGGGG-GGGGuCCG- -5'
5791 3' -67.7 NC_001806.1 + 143434 0.83 0.027465
Target:  5'- -cCCggCCCGCGCUCCCaCCCCCCGGGCc -3'
miRNA:   3'- gaGG--GGGCGUGAGGGgGGGGGGUCCG- -5'
5791 3' -67.7 NC_001806.1 + 108376 0.8 0.04337
Target:  5'- gCUCCCCCaGCcccucuuugcuuuccCUCCCCCCCCCCcggagAGGCg -3'
miRNA:   3'- -GAGGGGG-CGu--------------GAGGGGGGGGGG-----UCCG- -5'
5791 3' -67.7 NC_001806.1 + 143475 0.79 0.054206
Target:  5'- -cCCCCCGU-CUCCCCCCCCCCc-GCc -3'
miRNA:   3'- gaGGGGGCGuGAGGGGGGGGGGucCG- -5'
5791 3' -67.7 NC_001806.1 + 30145 0.78 0.057985
Target:  5'- -cCCCCCGCggcgcccaugccagGCUccgCCCCCCgCCCCGGGCc -3'
miRNA:   3'- gaGGGGGCG--------------UGA---GGGGGG-GGGGUCCG- -5'
5791 3' -67.7 NC_001806.1 + 277 0.78 0.059894
Target:  5'- cCUCCCCC-CGCUCCUCCCCCCgCucccgcGGCc -3'
miRNA:   3'- -GAGGGGGcGUGAGGGGGGGGG-Gu-----CCG- -5'
5791 3' -67.7 NC_001806.1 + 151987 0.78 0.059894
Target:  5'- cCUCCCCC-CGCUCCUCCCCCCgCucccgcGGCc -3'
miRNA:   3'- -GAGGGGGcGUGAGGGGGGGGG-Gu-----CCG- -5'
5791 3' -67.7 NC_001806.1 + 137227 0.78 0.066158
Target:  5'- gUCCCCCGCAggCCUgCCCCUCAGGg -3'
miRNA:   3'- gAGGGGGCGUgaGGGgGGGGGGUCCg -5'
5791 3' -67.7 NC_001806.1 + 30272 0.77 0.06782
Target:  5'- -gCCCCCGCGC-CCCggCCCCCgGGGCg -3'
miRNA:   3'- gaGGGGGCGUGaGGGg-GGGGGgUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.