Results 1 - 20 of 215 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5791 | 3' | -67.7 | NC_001806.1 | + | 32407 | 1.1 | 0.00024 |
Target: 5'- cCUCCCCCGCACUCCCCCCCCCCAGGCa -3' miRNA: 3'- -GAGGGGGCGUGAGGGGGGGGGGUCCG- -5' |
|||||||
5791 | 3' | -67.7 | NC_001806.1 | + | 143434 | 0.83 | 0.027465 |
Target: 5'- -cCCggCCCGCGCUCCCaCCCCCCGGGCc -3' miRNA: 3'- gaGG--GGGCGUGAGGGgGGGGGGUCCG- -5' |
|||||||
5791 | 3' | -67.7 | NC_001806.1 | + | 108376 | 0.8 | 0.04337 |
Target: 5'- gCUCCCCCaGCcccucuuugcuuuccCUCCCCCCCCCCcggagAGGCg -3' miRNA: 3'- -GAGGGGG-CGu--------------GAGGGGGGGGGG-----UCCG- -5' |
|||||||
5791 | 3' | -67.7 | NC_001806.1 | + | 143475 | 0.79 | 0.054206 |
Target: 5'- -cCCCCCGU-CUCCCCCCCCCCc-GCc -3' miRNA: 3'- gaGGGGGCGuGAGGGGGGGGGGucCG- -5' |
|||||||
5791 | 3' | -67.7 | NC_001806.1 | + | 30145 | 0.78 | 0.057985 |
Target: 5'- -cCCCCCGCggcgcccaugccagGCUccgCCCCCCgCCCCGGGCc -3' miRNA: 3'- gaGGGGGCG--------------UGA---GGGGGG-GGGGUCCG- -5' |
|||||||
5791 | 3' | -67.7 | NC_001806.1 | + | 151987 | 0.78 | 0.059894 |
Target: 5'- cCUCCCCC-CGCUCCUCCCCCCgCucccgcGGCc -3' miRNA: 3'- -GAGGGGGcGUGAGGGGGGGGG-Gu-----CCG- -5' |
|||||||
5791 | 3' | -67.7 | NC_001806.1 | + | 277 | 0.78 | 0.059894 |
Target: 5'- cCUCCCCC-CGCUCCUCCCCCCgCucccgcGGCc -3' miRNA: 3'- -GAGGGGGcGUGAGGGGGGGGG-Gu-----CCG- -5' |
|||||||
5791 | 3' | -67.7 | NC_001806.1 | + | 137227 | 0.78 | 0.066158 |
Target: 5'- gUCCCCCGCAggCCUgCCCCUCAGGg -3' miRNA: 3'- gAGGGGGCGUgaGGGgGGGGGGUCCg -5' |
|||||||
5791 | 3' | -67.7 | NC_001806.1 | + | 30272 | 0.77 | 0.06782 |
Target: 5'- -gCCCCCGCGC-CCCggCCCCCgGGGCg -3' miRNA: 3'- gaGGGGGCGUGaGGGg-GGGGGgUCCG- -5' |
|||||||
5791 | 3' | -67.7 | NC_001806.1 | + | 120807 | 0.77 | 0.070214 |
Target: 5'- -gCCCCCGCcucugggguuugccCUCCCCCCgCCCCcGGCa -3' miRNA: 3'- gaGGGGGCGu-------------GAGGGGGG-GGGGuCCG- -5' |
|||||||
5791 | 3' | -67.7 | NC_001806.1 | + | 30773 | 0.77 | 0.073051 |
Target: 5'- cCUCCUCCGC-UUCCgCCUCCUCGGGCg -3' miRNA: 3'- -GAGGGGGCGuGAGGgGGGGGGGUCCG- -5' |
|||||||
5791 | 3' | -67.7 | NC_001806.1 | + | 21803 | 0.77 | 0.073051 |
Target: 5'- -gCCCCCGgGCggacgCCgCCCCCgCCCGGGCc -3' miRNA: 3'- gaGGGGGCgUGa----GG-GGGGG-GGGUCCG- -5' |
|||||||
5791 | 3' | -67.7 | NC_001806.1 | + | 17118 | 0.76 | 0.082437 |
Target: 5'- -cCCCCCGUAaaucaccCUCCCCUCCCCCGGacGCc -3' miRNA: 3'- gaGGGGGCGU-------GAGGGGGGGGGGUC--CG- -5' |
|||||||
5791 | 3' | -67.7 | NC_001806.1 | + | 19829 | 0.76 | 0.084697 |
Target: 5'- -gCCCCCGCG-UCCCCCCCUCCuccgcccacccaAGGUg -3' miRNA: 3'- gaGGGGGCGUgAGGGGGGGGGG------------UCCG- -5' |
|||||||
5791 | 3' | -67.7 | NC_001806.1 | + | 4112 | 0.76 | 0.086802 |
Target: 5'- cCUCCUCCGCcucggGCgCCCCCCagaggCCCGGGCg -3' miRNA: 3'- -GAGGGGGCG-----UGaGGGGGGg----GGGUCCG- -5' |
|||||||
5791 | 3' | -67.7 | NC_001806.1 | + | 74015 | 0.76 | 0.091164 |
Target: 5'- --gCUCCGCGC-CCaCCCCCCCUGGGCc -3' miRNA: 3'- gagGGGGCGUGaGG-GGGGGGGGUCCG- -5' |
|||||||
5791 | 3' | -67.7 | NC_001806.1 | + | 23647 | 0.75 | 0.095734 |
Target: 5'- -aCCaCCCGCugUUCCCCgUCCCCuGGCg -3' miRNA: 3'- gaGG-GGGCGugAGGGGG-GGGGGuCCG- -5' |
|||||||
5791 | 3' | -67.7 | NC_001806.1 | + | 109 | 0.75 | 0.10553 |
Target: 5'- cCUCCCCC-CGCUCCUCCCCCCg---- -3' miRNA: 3'- -GAGGGGGcGUGAGGGGGGGGGguccg -5' |
|||||||
5791 | 3' | -67.7 | NC_001806.1 | + | 133 | 0.75 | 0.10553 |
Target: 5'- cCUCCCCC-CGCUCCUCCCCCCg---- -3' miRNA: 3'- -GAGGGGGcGUGAGGGGGGGGGguccg -5' |
|||||||
5791 | 3' | -67.7 | NC_001806.1 | + | 157 | 0.75 | 0.10553 |
Target: 5'- cCUCCCCC-CGCUCCUCCCCCCg---- -3' miRNA: 3'- -GAGGGGGcGUGAGGGGGGGGGguccg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home