miRNA display CGI


Results 21 - 40 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5791 3' -67.7 NC_001806.1 + 151915 0.75 0.10553
Target:  5'- cCUCCCCC-CGCUCCUCCCCCCg---- -3'
miRNA:   3'- -GAGGGGGcGUGAGGGGGGGGGguccg -5'
5791 3' -67.7 NC_001806.1 + 151939 0.75 0.10553
Target:  5'- cCUCCCCC-CGCUCCUCCCCCCg---- -3'
miRNA:   3'- -GAGGGGGcGUGAGGGGGGGGGguccg -5'
5791 3' -67.7 NC_001806.1 + 151963 0.75 0.10553
Target:  5'- cCUCCCCC-CGCUCCUCCCCCCg---- -3'
miRNA:   3'- -GAGGGGGcGUGAGGGGGGGGGguccg -5'
5791 3' -67.7 NC_001806.1 + 38701 0.75 0.10553
Target:  5'- -cCCCCCGgGCggggCCCCCgCCCCAccuccGGCa -3'
miRNA:   3'- gaGGGGGCgUGa---GGGGGgGGGGU-----CCG- -5'
5791 3' -67.7 NC_001806.1 + 151819 0.75 0.10553
Target:  5'- cCUCCCCC-CGCUCCUCCCCCCg---- -3'
miRNA:   3'- -GAGGGGGcGUGAGGGGGGGGGguccg -5'
5791 3' -67.7 NC_001806.1 + 151795 0.75 0.10553
Target:  5'- cCUCCCCC-CGCUCCUCCCCCCg---- -3'
miRNA:   3'- -GAGGGGGcGUGAGGGGGGGGGguccg -5'
5791 3' -67.7 NC_001806.1 + 253 0.75 0.10553
Target:  5'- cCUCCCCC-CGCUCCUCCCCCCg---- -3'
miRNA:   3'- -GAGGGGGcGUGAGGGGGGGGGguccg -5'
5791 3' -67.7 NC_001806.1 + 85 0.75 0.10553
Target:  5'- cCUCCCCC-CGCUCCUCCCCCCg---- -3'
miRNA:   3'- -GAGGGGGcGUGAGGGGGGGGGguccg -5'
5791 3' -67.7 NC_001806.1 + 109 0.75 0.10553
Target:  5'- cCUCCCCC-CGCUCCUCCCCCCg---- -3'
miRNA:   3'- -GAGGGGGcGUGAGGGGGGGGGguccg -5'
5791 3' -67.7 NC_001806.1 + 133 0.75 0.10553
Target:  5'- cCUCCCCC-CGCUCCUCCCCCCg---- -3'
miRNA:   3'- -GAGGGGGcGUGAGGGGGGGGGguccg -5'
5791 3' -67.7 NC_001806.1 + 157 0.75 0.10553
Target:  5'- cCUCCCCC-CGCUCCUCCCCCCg---- -3'
miRNA:   3'- -GAGGGGGcGUGAGGGGGGGGGguccg -5'
5791 3' -67.7 NC_001806.1 + 181 0.75 0.10553
Target:  5'- cCUCCCCC-CGCUCCUCCCCCCg---- -3'
miRNA:   3'- -GAGGGGGcGUGAGGGGGGGGGguccg -5'
5791 3' -67.7 NC_001806.1 + 205 0.75 0.10553
Target:  5'- cCUCCCCC-CGCUCCUCCCCCCg---- -3'
miRNA:   3'- -GAGGGGGcGUGAGGGGGGGGGguccg -5'
5791 3' -67.7 NC_001806.1 + 229 0.75 0.10553
Target:  5'- cCUCCCCC-CGCUCCUCCCCCCg---- -3'
miRNA:   3'- -GAGGGGGcGUGAGGGGGGGGGguccg -5'
5791 3' -67.7 NC_001806.1 + 78561 0.75 0.10656
Target:  5'- -aCCCCC-CGCUCCCCCCaacgcccucuaccggCCCaCGGGCc -3'
miRNA:   3'- gaGGGGGcGUGAGGGGGG---------------GGG-GUCCG- -5'
5791 3' -67.7 NC_001806.1 + 57965 0.75 0.110774
Target:  5'- -gCCCCCGC-CUCUCCCg-CCCGGGCa -3'
miRNA:   3'- gaGGGGGCGuGAGGGGGggGGGUCCG- -5'
5791 3' -67.7 NC_001806.1 + 53217 0.74 0.113487
Target:  5'- aUCCCCUGUACgacugggggggaUCCgcccuauuuUCCCCCCCGGGCc -3'
miRNA:   3'- gAGGGGGCGUG------------AGG---------GGGGGGGGUCCG- -5'
5791 3' -67.7 NC_001806.1 + 125395 0.74 0.113487
Target:  5'- gUCCCCUGC-C-CCCCCCaCCCCAGa- -3'
miRNA:   3'- gAGGGGGCGuGaGGGGGG-GGGGUCcg -5'
5791 3' -67.7 NC_001806.1 + 79983 0.74 0.116262
Target:  5'- cCUCgggUCCCGCGCcaaCCCCCCCCAGGg -3'
miRNA:   3'- -GAG---GGGGCGUGaggGGGGGGGGUCCg -5'
5791 3' -67.7 NC_001806.1 + 46271 0.74 0.118814
Target:  5'- aUCCgCCGCACUCCCagaCgCCCCCGcgucgacGGCg -3'
miRNA:   3'- gAGGgGGCGUGAGGGg--G-GGGGGU-------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.