miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5791 5' -49.2 NC_001806.1 + 1511 0.68 0.978133
Target:  5'- cGGGCuccAGcAGGGCgCGGGCGCAAAAGu -3'
miRNA:   3'- -UUCGua-UC-UCUCG-GUCCGUGUUUUUg -5'
5791 5' -49.2 NC_001806.1 + 2836 0.77 0.671207
Target:  5'- gGGGCGUGGAGgggGGCgCGGGCGCGGGGAg -3'
miRNA:   3'- -UUCGUAUCUC---UCG-GUCCGUGUUUUUg -5'
5791 5' -49.2 NC_001806.1 + 3541 0.67 0.98825
Target:  5'- -cGCG-GGGGAGgCGGGCGCGGcGGACa -3'
miRNA:   3'- uuCGUaUCUCUCgGUCCGUGUU-UUUG- -5'
5791 5' -49.2 NC_001806.1 + 5111 0.68 0.980545
Target:  5'- gGGGCccGGGGAGCCGgGGCGCu---GCu -3'
miRNA:   3'- -UUCGuaUCUCUCGGU-CCGUGuuuuUG- -5'
5791 5' -49.2 NC_001806.1 + 11518 0.66 0.994203
Target:  5'- uGGGCAUcuGGGGGCUguaaaucGGGCgACGGGAGCg -3'
miRNA:   3'- -UUCGUAu-CUCUCGG-------UCCG-UGUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 16877 0.69 0.972659
Target:  5'- gGGGC--GGGGAGuCCAGGCACGc---- -3'
miRNA:   3'- -UUCGuaUCUCUC-GGUCCGUGUuuuug -5'
5791 5' -49.2 NC_001806.1 + 21193 0.75 0.736204
Target:  5'- cGAGC--GGGGGGCCcucgggugGGGCGCGGAGACg -3'
miRNA:   3'- -UUCGuaUCUCUCGG--------UCCGUGUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 21287 0.66 0.993347
Target:  5'- cGGCGggacgGGAGGGCCcccgcggcGGGCACcgacgccggcGAGGACg -3'
miRNA:   3'- uUCGUa----UCUCUCGG--------UCCGUG----------UUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 22570 0.66 0.995858
Target:  5'- gGGGCcgcGGGGAGCCccggcgccGGCGCAGAuGACg -3'
miRNA:   3'- -UUCGua-UCUCUCGGu-------CCGUGUUU-UUG- -5'
5791 5' -49.2 NC_001806.1 + 24881 0.71 0.905702
Target:  5'- gGGGcCGUGGAGGuGCUGGGgGCGGAGGCg -3'
miRNA:   3'- -UUC-GUAUCUCU-CGGUCCgUGUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 25006 0.67 0.986594
Target:  5'- cGGGCcgGGAcgGGGCgGGGCGCuuguGAGACc -3'
miRNA:   3'- -UUCGuaUCU--CUCGgUCCGUGu---UUUUG- -5'
5791 5' -49.2 NC_001806.1 + 25098 0.68 0.978133
Target:  5'- gGGGCGggAGGGGGCgAGGgGCGGGAGg -3'
miRNA:   3'- -UUCGUa-UCUCUCGgUCCgUGUUUUUg -5'
5791 5' -49.2 NC_001806.1 + 25132 0.68 0.978133
Target:  5'- gGGGCGggAGGGGGCgAGGgGCGGGAGg -3'
miRNA:   3'- -UUCGUa-UCUCUCGgUCCgUGUUUUUg -5'
5791 5' -49.2 NC_001806.1 + 25166 0.68 0.978133
Target:  5'- gGGGCGggAGGGGGCgAGGgGCGGGAGg -3'
miRNA:   3'- -UUCGUa-UCUCUCGgUCCgUGUUUUUg -5'
5791 5' -49.2 NC_001806.1 + 25200 0.68 0.978133
Target:  5'- gGGGCGggAGGGGGCgAGGgGCGGGAGg -3'
miRNA:   3'- -UUCGUa-UCUCUCGgUCCgUGUUUUUg -5'
5791 5' -49.2 NC_001806.1 + 25234 0.68 0.978133
Target:  5'- gGGGCGggAGGGGGCgAGGgGCGGGAGg -3'
miRNA:   3'- -UUCGUa-UCUCUCGgUCCgUGUUUUUg -5'
5791 5' -49.2 NC_001806.1 + 25268 0.68 0.978133
Target:  5'- gGGGCGggAGGGGGCgAGGgGCGGGAGg -3'
miRNA:   3'- -UUCGUa-UCUCUCGgUCCgUGUUUUUg -5'
5791 5' -49.2 NC_001806.1 + 25302 0.68 0.978133
Target:  5'- gGGGCGggAGGGGGCgAGGgGCGGGAGg -3'
miRNA:   3'- -UUCGUa-UCUCUCGgUCCgUGUUUUUg -5'
5791 5' -49.2 NC_001806.1 + 25336 0.68 0.978133
Target:  5'- gGGGCGggAGGGGGCgAGGgGCGGGAGg -3'
miRNA:   3'- -UUCGUa-UCUCUCGgUCCgUGUUUUUg -5'
5791 5' -49.2 NC_001806.1 + 25370 0.68 0.978133
Target:  5'- gGGGCGggAGGGGGCgAGGgGCGGGAGg -3'
miRNA:   3'- -UUCGUa-UCUCUCGgUCCgUGUUUUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.