miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5791 5' -49.2 NC_001806.1 + 26167 0.66 0.996497
Target:  5'- gGAGCGgggGGAGgagcGGCCAGacGC-CGAAAACg -3'
miRNA:   3'- -UUCGUa--UCUC----UCGGUC--CGuGUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 44373 0.71 0.912269
Target:  5'- -uGCccGGGGAGCCAGcGCGUAGGAACg -3'
miRNA:   3'- uuCGuaUCUCUCGGUC-CGUGUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 62277 0.7 0.935749
Target:  5'- cAGCAggGGAGAGCguGGgACGGcGACg -3'
miRNA:   3'- uUCGUa-UCUCUCGguCCgUGUUuUUG- -5'
5791 5' -49.2 NC_001806.1 + 30425 0.7 0.935749
Target:  5'- cGGGCGUGGAGGG-UGGGCACGGGc-- -3'
miRNA:   3'- -UUCGUAUCUCUCgGUCCGUGUUUuug -5'
5791 5' -49.2 NC_001806.1 + 139827 0.7 0.94092
Target:  5'- gGGGCcgGGAGcGCCAGgaccgccugccGCGCGGAGGCg -3'
miRNA:   3'- -UUCGuaUCUCuCGGUC-----------CGUGUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 147679 0.7 0.945814
Target:  5'- -cGCcccGGGGGCCGGGgCGCGGGGGCg -3'
miRNA:   3'- uuCGuauCUCUCGGUCC-GUGUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 89270 0.7 0.950434
Target:  5'- uGGCuccgcGAGGGCCggcGGGCGCAAAAAa -3'
miRNA:   3'- uUCGuau--CUCUCGG---UCCGUGUUUUUg -5'
5791 5' -49.2 NC_001806.1 + 87467 0.69 0.958867
Target:  5'- aAAGCccuucUGGucGGCCAGGCGCAGcAGGCa -3'
miRNA:   3'- -UUCGu----AUCucUCGGUCCGUGUU-UUUG- -5'
5791 5' -49.2 NC_001806.1 + 87015 0.69 0.96269
Target:  5'- -cGCAUGGcGAGCCAGucccGCAgGAGGAUg -3'
miRNA:   3'- uuCGUAUCuCUCGGUC----CGUgUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 24881 0.71 0.905702
Target:  5'- gGGGcCGUGGAGGuGCUGGGgGCGGAGGCg -3'
miRNA:   3'- -UUC-GUAUCUCU-CGGUCCgUGUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 151189 0.72 0.884369
Target:  5'- -cGCAggcGGAGGGCgAGGCGCGgcggAAGGCg -3'
miRNA:   3'- uuCGUa--UCUCUCGgUCCGUGU----UUUUG- -5'
5791 5' -49.2 NC_001806.1 + 83904 0.73 0.860685
Target:  5'- -uGCAcGGAGGGUC-GGCGCGGGGGCg -3'
miRNA:   3'- uuCGUaUCUCUCGGuCCGUGUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 57497 0.77 0.671207
Target:  5'- cGAGgGUGGGGGcGCCAGGCACAcacauGAACc -3'
miRNA:   3'- -UUCgUAUCUCU-CGGUCCGUGUu----UUUG- -5'
5791 5' -49.2 NC_001806.1 + 2836 0.77 0.671207
Target:  5'- gGGGCGUGGAGgggGGCgCGGGCGCGGGGAg -3'
miRNA:   3'- -UUCGUAUCUC---UCG-GUCCGUGUUUUUg -5'
5791 5' -49.2 NC_001806.1 + 21193 0.75 0.736204
Target:  5'- cGAGC--GGGGGGCCcucgggugGGGCGCGGAGACg -3'
miRNA:   3'- -UUCGuaUCUCUCGG--------UCCGUGUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 33367 0.75 0.746734
Target:  5'- gGGGCccGGAGAGCCGcGGCACccGGACg -3'
miRNA:   3'- -UUCGuaUCUCUCGGU-CCGUGuuUUUG- -5'
5791 5' -49.2 NC_001806.1 + 25941 0.75 0.757146
Target:  5'- cGGGCGUGG-GGGCgGGGCcGCGGGAGCg -3'
miRNA:   3'- -UUCGUAUCuCUCGgUCCG-UGUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 55936 0.74 0.797384
Target:  5'- cGGCAaAGcGAGaCCGGGCAUGAAAACg -3'
miRNA:   3'- uUCGUaUCuCUC-GGUCCGUGUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 53999 0.73 0.841045
Target:  5'- -cGCAUGGGGAaaguGCCcacgaggcccgcgaGGGCACGAGGACc -3'
miRNA:   3'- uuCGUAUCUCU----CGG--------------UCCGUGUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 62620 0.73 0.852297
Target:  5'- aGGGgGUGGGuGGGCucCAGGCACGGGAGCg -3'
miRNA:   3'- -UUCgUAUCU-CUCG--GUCCGUGUUUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.