Results 21 - 40 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5792 | 3' | -45.3 | NC_001806.1 | + | 93981 | 0.66 | 0.999987 |
Target: 5'- -------cGGCCGCGGUaCAgaucgGCGCCg -3' miRNA: 3'- cuuuuuuuUUGGUGUCGcGUa----CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 31766 | 0.66 | 0.999994 |
Target: 5'- -----cAGAGCCGCGGCcCggGCuGCCu -3' miRNA: 3'- cuuuuuUUUUGGUGUCGcGuaCG-CGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 23347 | 0.66 | 0.999987 |
Target: 5'- cGAAGacGAAGAAgaGCGGCGCGgaCGCCc -3' miRNA: 3'- -CUUU--UUUUUUggUGUCGCGUacGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 37918 | 0.66 | 0.999982 |
Target: 5'- --------cGCCAUgggGGCGCcgGgGCCg -3' miRNA: 3'- cuuuuuuuuUGGUG---UCGCGuaCgCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 83484 | 0.66 | 0.999975 |
Target: 5'- ----cAAAuGCCugGGgGCGccccacUGCGCCg -3' miRNA: 3'- cuuuuUUUuUGGugUCgCGU------ACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 76297 | 0.66 | 0.999972 |
Target: 5'- cGGAGGAGAuauCCGCGGUGCGcaacgacccggcgGCgGCCg -3' miRNA: 3'- -CUUUUUUUuu-GGUGUCGCGUa------------CG-CGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 100387 | 0.66 | 0.999991 |
Target: 5'- --------cGCCggGCGGCGCggGgGCCg -3' miRNA: 3'- cuuuuuuuuUGG--UGUCGCGuaCgCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 77099 | 0.66 | 0.999982 |
Target: 5'- --------uACCAgGGCGUccuggGCGCCa -3' miRNA: 3'- cuuuuuuuuUGGUgUCGCGua---CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 76435 | 0.66 | 0.999982 |
Target: 5'- ---uGAAGGA-CACGGCGUAcGCGCa -3' miRNA: 3'- cuuuUUUUUUgGUGUCGCGUaCGCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 125245 | 0.66 | 0.999981 |
Target: 5'- cGGAAAugGAGuCCACGGUaggcccaGCAUGUccGCCg -3' miRNA: 3'- -CUUUUuuUUU-GGUGUCG-------CGUACG--CGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 151288 | 0.66 | 0.999987 |
Target: 5'- cGggGccGGGGGGCgGCGGCG-GUGgGCCg -3' miRNA: 3'- -CuuU--UUUUUUGgUGUCGCgUACgCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 33723 | 0.66 | 0.999994 |
Target: 5'- --------uGCCGCuugugAGUGCGcGCGCCg -3' miRNA: 3'- cuuuuuuuuUGGUG-----UCGCGUaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 96604 | 0.66 | 0.999994 |
Target: 5'- -----cAAAGCCGCcGCGCcc-CGCCg -3' miRNA: 3'- cuuuuuUUUUGGUGuCGCGuacGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 118862 | 0.66 | 0.999975 |
Target: 5'- ------uGGugCACGGCGUuUGcCGCCu -3' miRNA: 3'- cuuuuuuUUugGUGUCGCGuAC-GCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 66802 | 0.66 | 0.999991 |
Target: 5'- --cGGGAGGAUCACGGCcgagcggggccgGCccggguggccgguGUGCGCCg -3' miRNA: 3'- cuuUUUUUUUGGUGUCG------------CG-------------UACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 50332 | 0.66 | 0.999991 |
Target: 5'- ---cGGGAGGCCGCcuuccuggGGCGCGUGCuggauguGCUg -3' miRNA: 3'- cuuuUUUUUUGGUG--------UCGCGUACG-------CGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 3163 | 0.66 | 0.999991 |
Target: 5'- ------cAGGCuCACGGCGCGcacgGCgGCCa -3' miRNA: 3'- cuuuuuuUUUG-GUGUCGCGUa---CG-CGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 93409 | 0.66 | 0.999994 |
Target: 5'- cGAGGAGAugaugGAGCUgACcGCGCGUGC-CCu -3' miRNA: 3'- -CUUUUUU-----UUUGG-UGuCGCGUACGcGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 147109 | 0.66 | 0.999991 |
Target: 5'- -------cGGCCcagaaGCAGCGCggGgGCCg -3' miRNA: 3'- cuuuuuuuUUGG-----UGUCGCGuaCgCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 77145 | 0.66 | 0.999987 |
Target: 5'- --uGGAGGAGCUcggGgGGCGCGUG-GCCc -3' miRNA: 3'- cuuUUUUUUUGG---UgUCGCGUACgCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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