miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5792 3' -45.3 NC_001806.1 + 111661 0.66 0.999982
Target:  5'- --------uGCCGCGGC-CAUgGUGCCg -3'
miRNA:   3'- cuuuuuuuuUGGUGUCGcGUA-CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 8625 0.66 0.999975
Target:  5'- gGGAAGAGAGACgACAagaaggacGCGCGUGUcgauGCg -3'
miRNA:   3'- -CUUUUUUUUUGgUGU--------CGCGUACG----CGg -5'
5792 3' -45.3 NC_001806.1 + 37918 0.66 0.999982
Target:  5'- --------cGCCAUgggGGCGCcgGgGCCg -3'
miRNA:   3'- cuuuuuuuuUGGUG---UCGCGuaCgCGG- -5'
5792 3' -45.3 NC_001806.1 + 151151 0.66 0.999982
Target:  5'- ---------gUCGCAgGCGCAggcGCGCCa -3'
miRNA:   3'- cuuuuuuuuuGGUGU-CGCGUa--CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 85016 0.66 0.999975
Target:  5'- cGAGGAGAucGCCAUcguGCGCucgcucucgGUGCCc -3'
miRNA:   3'- -CUUUUUUuuUGGUGu--CGCGua-------CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 24963 0.66 0.999986
Target:  5'- -cGAAGAcGACgGCGGCGCGUucgagggggacgggGUGCUg -3'
miRNA:   3'- cuUUUUUuUUGgUGUCGCGUA--------------CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 89613 0.66 0.999982
Target:  5'- aGGAGAGugacguAGCCGguGgGCGUG-GCCg -3'
miRNA:   3'- -CUUUUUuu----UUGGUguCgCGUACgCGG- -5'
5792 3' -45.3 NC_001806.1 + 83484 0.66 0.999975
Target:  5'- ----cAAAuGCCugGGgGCGccccacUGCGCCg -3'
miRNA:   3'- cuuuuUUUuUGGugUCgCGU------ACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 109371 0.66 0.999994
Target:  5'- ---------cCCGCuuGGCGCccGCGCCc -3'
miRNA:   3'- cuuuuuuuuuGGUG--UCGCGuaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 145728 0.66 0.999975
Target:  5'- -------uGGCCGC-GCGgGUGCGCg -3'
miRNA:   3'- cuuuuuuuUUGGUGuCGCgUACGCGg -5'
5792 3' -45.3 NC_001806.1 + 151288 0.66 0.999987
Target:  5'- cGggGccGGGGGGCgGCGGCG-GUGgGCCg -3'
miRNA:   3'- -CuuU--UUUUUUGgUGUCGCgUACgCGG- -5'
5792 3' -45.3 NC_001806.1 + 77099 0.66 0.999982
Target:  5'- --------uACCAgGGCGUccuggGCGCCa -3'
miRNA:   3'- cuuuuuuuuUGGUgUCGCGua---CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 72020 0.66 0.999987
Target:  5'- ----cAGGGGCgCGCGGCGgAcUGCGCUg -3'
miRNA:   3'- cuuuuUUUUUG-GUGUCGCgU-ACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 93981 0.66 0.999987
Target:  5'- -------cGGCCGCGGUaCAgaucgGCGCCg -3'
miRNA:   3'- cuuuuuuuUUGGUGUCGcGUa----CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 29451 0.66 0.999975
Target:  5'- --cGAGGAGGCCGuCAGgGCggGCacgGCCg -3'
miRNA:   3'- cuuUUUUUUUGGU-GUCgCGuaCG---CGG- -5'
5792 3' -45.3 NC_001806.1 + 77145 0.66 0.999987
Target:  5'- --uGGAGGAGCUcggGgGGCGCGUG-GCCc -3'
miRNA:   3'- cuuUUUUUUUGG---UgUCGCGUACgCGG- -5'
5792 3' -45.3 NC_001806.1 + 132219 0.66 0.999987
Target:  5'- ---------cCCAguGCGCGUcCGCCg -3'
miRNA:   3'- cuuuuuuuuuGGUguCGCGUAcGCGG- -5'
5792 3' -45.3 NC_001806.1 + 125245 0.66 0.999981
Target:  5'- cGGAAAugGAGuCCACGGUaggcccaGCAUGUccGCCg -3'
miRNA:   3'- -CUUUUuuUUU-GGUGUCG-------CGUACG--CGG- -5'
5792 3' -45.3 NC_001806.1 + 118862 0.66 0.999975
Target:  5'- ------uGGugCACGGCGUuUGcCGCCu -3'
miRNA:   3'- cuuuuuuUUugGUGUCGCGuAC-GCGG- -5'
5792 3' -45.3 NC_001806.1 + 76435 0.66 0.999982
Target:  5'- ---uGAAGGA-CACGGCGUAcGCGCa -3'
miRNA:   3'- cuuuUUUUUUgGUGUCGCGUaCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.