miRNA display CGI


Results 1 - 20 of 194 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5792 3' -45.3 NC_001806.1 + 32919 0.99 0.109189
Target:  5'- gGAAAAAAAAACCACA-CGCAUGCGCCg -3'
miRNA:   3'- -CUUUUUUUUUGGUGUcGCGUACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 145577 0.89 0.390768
Target:  5'- uGGAAGGAAAugCACGGCGCGUGUGUa -3'
miRNA:   3'- -CUUUUUUUUugGUGUCGCGUACGCGg -5'
5792 3' -45.3 NC_001806.1 + 112947 0.84 0.608093
Target:  5'- uGggGGAAGGACCGCcaGGUGC-UGCGCCu -3'
miRNA:   3'- -CuuUUUUUUUGGUG--UCGCGuACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 64944 0.81 0.74019
Target:  5'- ---uGAGGGACCAcCGGCGUcgGCGCCc -3'
miRNA:   3'- cuuuUUUUUUGGU-GUCGCGuaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 37296 0.81 0.761185
Target:  5'- uGGAGAAAGGGCCGCAgGCGCGUG-GCg -3'
miRNA:   3'- -CUUUUUUUUUGGUGU-CGCGUACgCGg -5'
5792 3' -45.3 NC_001806.1 + 145025 0.79 0.82978
Target:  5'- -------cGGCC-CGGCGCAUGCGCUg -3'
miRNA:   3'- cuuuuuuuUUGGuGUCGCGUACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 3795 0.78 0.871814
Target:  5'- -------uGGCCACGGCggccgccGCGUGCGCCa -3'
miRNA:   3'- cuuuuuuuUUGGUGUCG-------CGUACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 105948 0.77 0.915552
Target:  5'- ----cAAAAACCACcGCGCGgauuucugGCGCCg -3'
miRNA:   3'- cuuuuUUUUUGGUGuCGCGUa-------CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 70985 0.77 0.921739
Target:  5'- -------cGGCCAUccgagagguaauGGCGCAUGCGCCc -3'
miRNA:   3'- cuuuuuuuUUGGUG------------UCGCGUACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 88672 0.76 0.933262
Target:  5'- -----cAGGGCCGCGGC-CAUGCGCUc -3'
miRNA:   3'- cuuuuuUUUUGGUGUCGcGUACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 78333 0.76 0.938598
Target:  5'- cGAGcuGGGAACCG-AGCGCG-GCGCCg -3'
miRNA:   3'- -CUUuuUUUUUGGUgUCGCGUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 22577 0.76 0.938598
Target:  5'- ---cGGGGAGCCcCGGCGCcgGCGCa -3'
miRNA:   3'- cuuuUUUUUUGGuGUCGCGuaCGCGg -5'
5792 3' -45.3 NC_001806.1 + 76563 0.76 0.943652
Target:  5'- cGGGAGGugcuGGCCGC-GCGCGaGCGCCg -3'
miRNA:   3'- -CUUUUUuu--UUGGUGuCGCGUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 70630 0.76 0.948426
Target:  5'- -----cGAAACCACGGCGCAccugggggUGUGCg -3'
miRNA:   3'- cuuuuuUUUUGGUGUCGCGU--------ACGCGg -5'
5792 3' -45.3 NC_001806.1 + 74619 0.76 0.948426
Target:  5'- ----cAGAGGCCAC-GCGCAUG-GCCg -3'
miRNA:   3'- cuuuuUUUUUGGUGuCGCGUACgCGG- -5'
5792 3' -45.3 NC_001806.1 + 130976 0.75 0.961112
Target:  5'- -cGGAGGAAGCCGucaAGCGCGU-CGCCg -3'
miRNA:   3'- cuUUUUUUUUGGUg--UCGCGUAcGCGG- -5'
5792 3' -45.3 NC_001806.1 + 92435 0.75 0.961112
Target:  5'- ----cAAGAGCCGCguguuguucgcgGGCGCGaGCGCCa -3'
miRNA:   3'- cuuuuUUUUUGGUG------------UCGCGUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 53626 0.75 0.964811
Target:  5'- aGAGGAGAcgagacAGACCGCAGUaCAcGCGCCu -3'
miRNA:   3'- -CUUUUUU------UUUGGUGUCGcGUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 3471 0.75 0.964811
Target:  5'- -------cGGCCugGGCGCG-GCGCCc -3'
miRNA:   3'- cuuuuuuuUUGGugUCGCGUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 1791 0.75 0.968256
Target:  5'- ------cGGGCCGaAGCGCGUGCGCa -3'
miRNA:   3'- cuuuuuuUUUGGUgUCGCGUACGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.