Results 1 - 20 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5792 | 3' | -45.3 | NC_001806.1 | + | 109371 | 0.66 | 0.999994 |
Target: 5'- ---------cCCGCuuGGCGCccGCGCCc -3' miRNA: 3'- cuuuuuuuuuGGUG--UCGCGuaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 76563 | 0.76 | 0.943652 |
Target: 5'- cGGGAGGugcuGGCCGC-GCGCGaGCGCCg -3' miRNA: 3'- -CUUUUUuu--UUGGUGuCGCGUaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 70630 | 0.76 | 0.948426 |
Target: 5'- -----cGAAACCACGGCGCAccugggggUGUGCg -3' miRNA: 3'- cuuuuuUUUUGGUGUCGCGU--------ACGCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 74619 | 0.76 | 0.948426 |
Target: 5'- ----cAGAGGCCAC-GCGCAUG-GCCg -3' miRNA: 3'- cuuuuUUUUUGGUGuCGCGUACgCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 92435 | 0.75 | 0.961112 |
Target: 5'- ----cAAGAGCCGCguguuguucgcgGGCGCGaGCGCCa -3' miRNA: 3'- cuuuuUUUUUGGUG------------UCGCGUaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 130976 | 0.75 | 0.961112 |
Target: 5'- -cGGAGGAAGCCGucaAGCGCGU-CGCCg -3' miRNA: 3'- cuUUUUUUUUGGUg--UCGCGUAcGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 53626 | 0.75 | 0.964811 |
Target: 5'- aGAGGAGAcgagacAGACCGCAGUaCAcGCGCCu -3' miRNA: 3'- -CUUUUUU------UUUGGUGUCGcGUaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 3471 | 0.75 | 0.964811 |
Target: 5'- -------cGGCCugGGCGCG-GCGCCc -3' miRNA: 3'- cuuuuuuuUUGGugUCGCGUaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 1791 | 0.75 | 0.968256 |
Target: 5'- ------cGGGCCGaAGCGCGUGCGCa -3' miRNA: 3'- cuuuuuuUUUGGUgUCGCGUACGCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 78333 | 0.76 | 0.938598 |
Target: 5'- cGAGcuGGGAACCG-AGCGCG-GCGCCg -3' miRNA: 3'- -CUUuuUUUUUGGUgUCGCGUaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 22577 | 0.76 | 0.938598 |
Target: 5'- ---cGGGGAGCCcCGGCGCcgGCGCa -3' miRNA: 3'- cuuuUUUUUUGGuGUCGCGuaCGCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 88672 | 0.76 | 0.933262 |
Target: 5'- -----cAGGGCCGCGGC-CAUGCGCUc -3' miRNA: 3'- cuuuuuUUUUGGUGUCGcGUACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 145577 | 0.89 | 0.390768 |
Target: 5'- uGGAAGGAAAugCACGGCGCGUGUGUa -3' miRNA: 3'- -CUUUUUUUUugGUGUCGCGUACGCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 112947 | 0.84 | 0.608093 |
Target: 5'- uGggGGAAGGACCGCcaGGUGC-UGCGCCu -3' miRNA: 3'- -CuuUUUUUUUGGUG--UCGCGuACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 64944 | 0.81 | 0.74019 |
Target: 5'- ---uGAGGGACCAcCGGCGUcgGCGCCc -3' miRNA: 3'- cuuuUUUUUUGGU-GUCGCGuaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 37296 | 0.81 | 0.761185 |
Target: 5'- uGGAGAAAGGGCCGCAgGCGCGUG-GCg -3' miRNA: 3'- -CUUUUUUUUUGGUGU-CGCGUACgCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 145025 | 0.79 | 0.82978 |
Target: 5'- -------cGGCC-CGGCGCAUGCGCUg -3' miRNA: 3'- cuuuuuuuUUGGuGUCGCGUACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 3795 | 0.78 | 0.871814 |
Target: 5'- -------uGGCCACGGCggccgccGCGUGCGCCa -3' miRNA: 3'- cuuuuuuuUUGGUGUCG-------CGUACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 105948 | 0.77 | 0.915552 |
Target: 5'- ----cAAAAACCACcGCGCGgauuucugGCGCCg -3' miRNA: 3'- cuuuuUUUUUGGUGuCGCGUa-------CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 70985 | 0.77 | 0.921739 |
Target: 5'- -------cGGCCAUccgagagguaauGGCGCAUGCGCCc -3' miRNA: 3'- cuuuuuuuUUGGUG------------UCGCGUACGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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