miRNA display CGI


Results 21 - 40 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5792 3' -45.3 NC_001806.1 + 3891 0.74 0.971455
Target:  5'- uGAuGAAGGAGCUGCuguuGCGCGcgGCGCCc -3'
miRNA:   3'- -CUuUUUUUUUGGUGu---CGCGUa-CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 35551 0.74 0.974415
Target:  5'- ------cGAGCCGCucGGCGCGcccgGCGCCg -3'
miRNA:   3'- cuuuuuuUUUGGUG--UCGCGUa---CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 23474 0.74 0.977145
Target:  5'- --------cGCCGCGGCGCAggcccgcccGCGCCc -3'
miRNA:   3'- cuuuuuuuuUGGUGUCGCGUa--------CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 82980 0.73 0.981954
Target:  5'- ----uAAAGuUCGCuGGCGCGUGCGCCc -3'
miRNA:   3'- cuuuuUUUUuGGUG-UCGCGUACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 29163 0.73 0.985959
Target:  5'- -cGAGGAAGACCccgGCAGuUGCGgggGCGCCc -3'
miRNA:   3'- cuUUUUUUUUGG---UGUC-GCGUa--CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 120151 0.73 0.989246
Target:  5'- ----cGAAucUCACAGCGCcUGCGCUa -3'
miRNA:   3'- cuuuuUUUuuGGUGUCGCGuACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 99098 0.73 0.989246
Target:  5'- uAAAuAAAAACCACGGguguuaaacCGCAUGUGCa -3'
miRNA:   3'- cUUUuUUUUUGGUGUC---------GCGUACGCGg -5'
5792 3' -45.3 NC_001806.1 + 24302 0.73 0.989246
Target:  5'- -------uGGCCgGCGGCGCGggaccUGCGCCg -3'
miRNA:   3'- cuuuuuuuUUGG-UGUCGCGU-----ACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 101040 0.72 0.990646
Target:  5'- ----cGAAAAUCGCAGCGCugGCgGCCg -3'
miRNA:   3'- cuuuuUUUUUGGUGUCGCGuaCG-CGG- -5'
5792 3' -45.3 NC_001806.1 + 33290 0.72 0.990646
Target:  5'- cGAAAAAAcAGACCAgCGGCcgGCcgGCGCUu -3'
miRNA:   3'- -CUUUUUU-UUUGGU-GUCG--CGuaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 82048 0.72 0.991899
Target:  5'- cGAAAcgcGAGcuGCaCGCGGgGCAUGCGCa -3'
miRNA:   3'- -CUUU---UUUuuUG-GUGUCgCGUACGCGg -5'
5792 3' -45.3 NC_001806.1 + 24414 0.72 0.991899
Target:  5'- --------cGCCGCuGCGCcUGUGCCg -3'
miRNA:   3'- cuuuuuuuuUGGUGuCGCGuACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 2758 0.72 0.993016
Target:  5'- -------cGGCCACGGgGCGcgggcgggccUGCGCCg -3'
miRNA:   3'- cuuuuuuuUUGGUGUCgCGU----------ACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 98958 0.72 0.993016
Target:  5'- aAGAAGAAGGgCACgAGCGCGcugcucaGCGCCa -3'
miRNA:   3'- cUUUUUUUUUgGUG-UCGCGUa------CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 82945 0.71 0.994879
Target:  5'- -----uGGGACCGCAGCGCGcagucggggauUGUGUCc -3'
miRNA:   3'- cuuuuuUUUUGGUGUCGCGU-----------ACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 88976 0.71 0.994879
Target:  5'- ---------cCCACAgGCGCGaGCGCCg -3'
miRNA:   3'- cuuuuuuuuuGGUGU-CGCGUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 23710 0.71 0.995646
Target:  5'- -------cGAUCGCcGCGCGgUGCGCCg -3'
miRNA:   3'- cuuuuuuuUUGGUGuCGCGU-ACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 56498 0.71 0.995646
Target:  5'- cGAGAAAcaccuGGGGCCACAGCgGCAgGC-CCg -3'
miRNA:   3'- -CUUUUU-----UUUUGGUGUCG-CGUaCGcGG- -5'
5792 3' -45.3 NC_001806.1 + 29959 0.71 0.995646
Target:  5'- ------cGAGCCGCGGCGCcgcgggggGCGUCu -3'
miRNA:   3'- cuuuuuuUUUGGUGUCGCGua------CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 150990 0.71 0.996317
Target:  5'- ------cGAGCCGCGGCGCGccaggcggGCgGCCg -3'
miRNA:   3'- cuuuuuuUUUGGUGUCGCGUa-------CG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.