miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5792 5' -69.9 NC_001806.1 + 15847 0.66 0.345185
Target:  5'- cGGGCCCCuu-UUGGGGCCgCggGGGg -3'
miRNA:   3'- cCCCGGGGcccGGCCCCGGgGaaCCC- -5'
5792 5' -69.9 NC_001806.1 + 18484 0.66 0.364379
Target:  5'- -cGGCCacgaccgcagacagCCaGGGCUGGGaGCCCUccUGGGg -3'
miRNA:   3'- ccCCGG--------------GG-CCCGGCCC-CGGGGa-ACCC- -5'
5792 5' -69.9 NC_001806.1 + 19102 0.73 0.118926
Target:  5'- uGGGGCCgaCgGGGUgGGGGCCCg--GGGc -3'
miRNA:   3'- -CCCCGG--GgCCCGgCCCCGGGgaaCCC- -5'
5792 5' -69.9 NC_001806.1 + 20310 0.67 0.29637
Target:  5'- uGGGGCggucccgCCCGccGGCCaaugggGGGGCggcaaggcgggcggCCCUUGGGc -3'
miRNA:   3'- -CCCCG-------GGGC--CCGG------CCCCG--------------GGGAACCC- -5'
5792 5' -69.9 NC_001806.1 + 20625 0.67 0.292656
Target:  5'- cGGGGCCggggguucgaccaaCGGGCCGcggccacGGGCCCCcggcgugccggcgucGGGg -3'
miRNA:   3'- -CCCCGGg-------------GCCCGGC-------CCCGGGGaa-------------CCC- -5'
5792 5' -69.9 NC_001806.1 + 21509 0.8 0.037155
Target:  5'- cGGGCCCCGGcCCGGGGCCgCgaacGGGa -3'
miRNA:   3'- cCCCGGGGCCcGGCCCCGGgGaa--CCC- -5'
5792 5' -69.9 NC_001806.1 + 21776 0.66 0.366556
Target:  5'- cGGGGUCCgucgagcgCGGcGCCGGcaGCCCCc-GGGc -3'
miRNA:   3'- -CCCCGGG--------GCC-CGGCCc-CGGGGaaCCC- -5'
5792 5' -69.9 NC_001806.1 + 21951 0.74 0.098359
Target:  5'- cGGGCCCUucacGGCCGGGcaGCCCCggcGGGu -3'
miRNA:   3'- cCCCGGGGc---CCGGCCC--CGGGGaa-CCC- -5'
5792 5' -69.9 NC_001806.1 + 22047 0.71 0.164772
Target:  5'- cGGGGagccguggCCCGGcGCCGGGcccccGCCCCcgGGGc -3'
miRNA:   3'- -CCCCg-------GGGCC-CGGCCC-----CGGGGaaCCC- -5'
5792 5' -69.9 NC_001806.1 + 22106 0.68 0.246583
Target:  5'- uGGGCgacagccgCCCGGGCCucuggGGGGCgCCCgaGGcGg -3'
miRNA:   3'- cCCCG--------GGGCCCGG-----CCCCG-GGGaaCC-C- -5'
5792 5' -69.9 NC_001806.1 + 22175 0.73 0.116151
Target:  5'- cGGGcGCCCCGgcGGCCGuguGGGCgCCCgagcUGGGc -3'
miRNA:   3'- -CCC-CGGGGC--CCGGC---CCCG-GGGa---ACCC- -5'
5792 5' -69.9 NC_001806.1 + 22578 0.66 0.324724
Target:  5'- gGGGaGCCCCGGcGCCGGcGCagaugaCgaGGGg -3'
miRNA:   3'- -CCC-CGGGGCC-CGGCCcCGgg----GaaCCC- -5'
5792 5' -69.9 NC_001806.1 + 22893 0.67 0.288979
Target:  5'- cGGGGCCCggcccgccagcccccCGcGGCCGGaGGgaCCCgcGGGc -3'
miRNA:   3'- -CCCCGGG---------------GC-CCGGCC-CCg-GGGaaCCC- -5'
5792 5' -69.9 NC_001806.1 + 23108 0.69 0.216105
Target:  5'- cGGGGCCCUGGGCCccGcGCUgCCgcGGGa -3'
miRNA:   3'- -CCCCGGGGCCCGGccC-CGG-GGaaCCC- -5'
5792 5' -69.9 NC_001806.1 + 23461 0.68 0.254189
Target:  5'- cGGcGCCCCGGGCCGccgcGGcgcaggcccgcccgcGCCCCgUGGc -3'
miRNA:   3'- cCC-CGGGGCCCGGC----CC---------------CGGGGaACCc -5'
5792 5' -69.9 NC_001806.1 + 23527 0.67 0.280539
Target:  5'- aGGGCCCCGacccccugggcGGCUGGcGGCggcagCCCccGGGg -3'
miRNA:   3'- cCCCGGGGC-----------CCGGCC-CCG-----GGGaaCCC- -5'
5792 5' -69.9 NC_001806.1 + 23795 0.66 0.324724
Target:  5'- cGGGGCCgCCggGGGCCGccucuuuGGCCCCcUGc- -3'
miRNA:   3'- -CCCCGG-GG--CCCGGCc------CCGGGGaACcc -5'
5792 5' -69.9 NC_001806.1 + 24336 0.69 0.23092
Target:  5'- -uGGCCUCGGGCCGcguguucGGCCCg--GGGg -3'
miRNA:   3'- ccCCGGGGCCCGGCc------CCGGGgaaCCC- -5'
5792 5' -69.9 NC_001806.1 + 24802 0.68 0.263117
Target:  5'- gGGGGCCCUGccGCCGGcGCCgCCc-GGGa -3'
miRNA:   3'- -CCCCGGGGCc-CGGCCcCGG-GGaaCCC- -5'
5792 5' -69.9 NC_001806.1 + 25540 0.72 0.133748
Target:  5'- uGGGGCCggggaGGGCUGGGGCCg---GGGa -3'
miRNA:   3'- -CCCCGGgg---CCCGGCCCCGGggaaCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.