Results 1 - 20 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5792 | 5' | -69.9 | NC_001806.1 | + | 2440 | 0.72 | 0.127625 |
Target: 5'- gGGGGCCaaagaggCGGcccCCGGcGGCCCCgUGGGg -3' miRNA: 3'- -CCCCGGg------GCCc--GGCC-CCGGGGaACCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 2700 | 0.71 | 0.155199 |
Target: 5'- gGGGGCugccgccgccagccgCCCaggGGGUCGGGGCCCUcgGcGGg -3' miRNA: 3'- -CCCCG---------------GGG---CCCGGCCCCGGGGaaC-CC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 2796 | 0.77 | 0.064344 |
Target: 5'- cGGGGCgCCgCGGGCUGggcgggggcgggcucGGGCCCCggGGGc -3' miRNA: 3'- -CCCCG-GG-GCCCGGC---------------CCCGGGGaaCCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 2942 | 0.71 | 0.156277 |
Target: 5'- gGGcGGCCgggCCGGGCCGGGacucuugcgcuugcGCCCCUcccgcggcgcgGGGa -3' miRNA: 3'- -CC-CCGG---GGCCCGGCCC--------------CGGGGAa----------CCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 3124 | 0.73 | 0.116151 |
Target: 5'- cGGGUCCCGcGGCagcgCGGGGCCCa--GGGc -3' miRNA: 3'- cCCCGGGGC-CCG----GCCCCGGGgaaCCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 3351 | 0.72 | 0.143441 |
Target: 5'- gGGGGCUggCGGGCCGGGccccggccaGCCCC--GGGa -3' miRNA: 3'- -CCCCGGg-GCCCGGCCC---------CGGGGaaCCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 4061 | 0.69 | 0.21135 |
Target: 5'- cGGGcGCCCacaCGGccGCCGGGGCgCCCgaGGc -3' miRNA: 3'- -CCC-CGGG---GCC--CGGCCCCG-GGGaaCCc -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 4177 | 0.67 | 0.318106 |
Target: 5'- --cGCCCCggGGGCgGGGGCCCggcgccGGGc -3' miRNA: 3'- cccCGGGG--CCCGgCCCCGGGgaa---CCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 4426 | 0.75 | 0.079249 |
Target: 5'- gGGGGUggCCCGGGCgGGGGCggcguccgCCCggGGGc -3' miRNA: 3'- -CCCCG--GGGCCCGgCCCCG--------GGGaaCCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 4738 | 0.82 | 0.026934 |
Target: 5'- -cGGCCCCGGGCCGGGGCCCg----- -3' miRNA: 3'- ccCCGGGGCCCGGCCCCGGGgaaccc -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 4821 | 0.66 | 0.345185 |
Target: 5'- gGGGGUCCgGGGCgGcGaGGCCgCg-GGGu -3' miRNA: 3'- -CCCCGGGgCCCGgC-C-CCGGgGaaCCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 5110 | 0.71 | 0.168593 |
Target: 5'- uGGGGCCCgGGgaGCCGGGGCgCUgCUUGu- -3' miRNA: 3'- -CCCCGGGgCC--CGGCCCCG-GG-GAACcc -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 5598 | 0.77 | 0.063721 |
Target: 5'- cGGGGgCCCGuGGCCGcGGCCCgUUGGu -3' miRNA: 3'- -CCCCgGGGC-CCGGCcCCGGGgAACCc -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 5944 | 0.69 | 0.236046 |
Target: 5'- cGGGaccGCCCCaagGGGgCGGGGCCgCC--GGGu -3' miRNA: 3'- -CCC---CGGGG---CCCgGCCCCGG-GGaaCCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 6072 | 0.66 | 0.366556 |
Target: 5'- -cGGCCCCGGGggcGGGCCCgggcggcgGGGg -3' miRNA: 3'- ccCCGGGGCCCggcCCCGGGgaa-----CCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 7399 | 0.73 | 0.118926 |
Target: 5'- aGGGaGCCCCGGucuccCCGGGaGCCCCggucuccccGGGa -3' miRNA: 3'- -CCC-CGGGGCCc----GGCCC-CGGGGaa-------CCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 9336 | 0.74 | 0.098359 |
Target: 5'- uGGGGCCUCGGGauGGGGCgCCUUa-- -3' miRNA: 3'- -CCCCGGGGCCCggCCCCGgGGAAccc -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 9773 | 0.73 | 0.116151 |
Target: 5'- gGGGGCgCgUGGGgaGGGGCCCCgacgugcgggUGGGu -3' miRNA: 3'- -CCCCG-GgGCCCggCCCCGGGGa---------ACCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 12910 | 0.66 | 0.324724 |
Target: 5'- cGGGGUCCUccaagaGGGCCgaauccucGGGGUCUUccGGGg -3' miRNA: 3'- -CCCCGGGG------CCCGG--------CCCCGGGGaaCCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 13604 | 0.66 | 0.352209 |
Target: 5'- gGGGGCUggaaCGGGuCCGGuaGGCCCgCcUGGa -3' miRNA: 3'- -CCCCGGg---GCCC-GGCC--CCGGG-GaACCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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