Results 1 - 20 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5792 | 5' | -69.9 | NC_001806.1 | + | 96516 | 0.66 | 0.367284 |
Target: 5'- gGGGGCCCugccacucCGGcGCCGcccGCCCCUggcgcccccccaacgGGGg -3' miRNA: 3'- -CCCCGGG--------GCC-CGGCcc-CGGGGAa--------------CCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 5598 | 0.77 | 0.063721 |
Target: 5'- cGGGGgCCCGuGGCCGcGGCCCgUUGGu -3' miRNA: 3'- -CCCCgGGGC-CCGGCcCCGGGgAACCc -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 2796 | 0.77 | 0.064344 |
Target: 5'- cGGGGCgCCgCGGGCUGggcgggggcgggcucGGGCCCCggGGGc -3' miRNA: 3'- -CCCCG-GG-GCCCGGC---------------CCCGGGGaaCCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 122034 | 0.76 | 0.06529 |
Target: 5'- uGGGU--CGGGucgacCCGGGGCCCCUUGGGa -3' miRNA: 3'- cCCCGggGCCC-----GGCCCCGGGGAACCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 37933 | 0.76 | 0.074425 |
Target: 5'- gGGGccguccguccaccccGCCCCGGGgCGGGGUCCCccaGGGu -3' miRNA: 3'- -CCC---------------CGGGGCCCgGCCCCGGGGaa-CCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 4426 | 0.75 | 0.079249 |
Target: 5'- gGGGGUggCCCGGGCgGGGGCggcguccgCCCggGGGc -3' miRNA: 3'- -CCCCG--GGGCCCGgCCCCG--------GGGaaCCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 105744 | 0.75 | 0.081184 |
Target: 5'- cGGGCCCCguggguuaGGGaCGGGGUCCCccaUGGGg -3' miRNA: 3'- cCCCGGGG--------CCCgGCCCCGGGGa--ACCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 81830 | 0.75 | 0.083163 |
Target: 5'- aGGGCCUgugccaCGGGCgGGaGGgCCCUUGGGu -3' miRNA: 3'- cCCCGGG------GCCCGgCC-CCgGGGAACCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 147784 | 0.74 | 0.096037 |
Target: 5'- gGGGGCCCgGGGCgGGGGgCggagCCUggcaUGGGc -3' miRNA: 3'- -CCCCGGGgCCCGgCCCCgG----GGA----ACCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 64961 | 0.77 | 0.062189 |
Target: 5'- -cGGCgCCCGGGCCgGGGGUCCCg-GGGc -3' miRNA: 3'- ccCCG-GGGCCCGG-CCCCGGGGaaCCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 59142 | 0.77 | 0.055047 |
Target: 5'- aGGGCagCCGGGCCGGGGUCUCgggUGcGGg -3' miRNA: 3'- cCCCGg-GGCCCGGCCCCGGGGa--AC-CC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 33049 | 0.78 | 0.04637 |
Target: 5'- -aGGCCCCGGGCCGGGaacccggaaaaGCCuCCggGGGg -3' miRNA: 3'- ccCCGGGGCCCGGCCC-----------CGG-GGaaCCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 32986 | 0.86 | 0.011544 |
Target: 5'- cGGGGCCCCGGGCC-GGGCCgCCacgGGGg -3' miRNA: 3'- -CCCCGGGGCCCGGcCCCGG-GGaa-CCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 57041 | 0.85 | 0.014098 |
Target: 5'- cGGGCCCgGGGCCGGGGCCCCc-GGc -3' miRNA: 3'- cCCCGGGgCCCGGCCCCGGGGaaCCc -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 144999 | 0.84 | 0.016375 |
Target: 5'- aGGGGCCCCGGcCCGGGGCCCCa---- -3' miRNA: 3'- -CCCCGGGGCCcGGCCCCGGGGaaccc -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 4738 | 0.82 | 0.026934 |
Target: 5'- -cGGCCCCGGGCCGGGGCCCg----- -3' miRNA: 3'- ccCCGGGGCCCGGCCCCGGGgaaccc -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 111197 | 0.8 | 0.032595 |
Target: 5'- cGGGCCCUGgggauagccugcgcGGCCGGGGCCUCgaugUGGGu -3' miRNA: 3'- cCCCGGGGC--------------CCGGCCCCGGGGa---ACCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 133004 | 0.8 | 0.034502 |
Target: 5'- --aGCCCUGGGCCGGGGCCgUCUUGGa -3' miRNA: 3'- cccCGGGGCCCGGCCCCGG-GGAACCc -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 21509 | 0.8 | 0.037155 |
Target: 5'- cGGGCCCCGGcCCGGGGCCgCgaacGGGa -3' miRNA: 3'- cCCCGGGGCCcGGCCCCGGgGaa--CCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 149823 | 0.79 | 0.044147 |
Target: 5'- cGGGuacucGCUCCGGGgCGGGGCUCCaUGGGg -3' miRNA: 3'- -CCC-----CGGGGCCCgGCCCCGGGGaACCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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