miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5792 5' -69.9 NC_001806.1 + 32954 1.09 0.000208
Target:  5'- uGGGGCCCCGGGCCGGGGCCCCUUGGGu -3'
miRNA:   3'- -CCCCGGGGCCCGGCCCCGGGGAACCC- -5'
5792 5' -69.9 NC_001806.1 + 32986 0.86 0.011544
Target:  5'- cGGGGCCCCGGGCC-GGGCCgCCacgGGGg -3'
miRNA:   3'- -CCCCGGGGCCCGGcCCCGG-GGaa-CCC- -5'
5792 5' -69.9 NC_001806.1 + 57041 0.85 0.014098
Target:  5'- cGGGCCCgGGGCCGGGGCCCCc-GGc -3'
miRNA:   3'- cCCCGGGgCCCGGCCCCGGGGaaCCc -5'
5792 5' -69.9 NC_001806.1 + 144999 0.84 0.016375
Target:  5'- aGGGGCCCCGGcCCGGGGCCCCa---- -3'
miRNA:   3'- -CCCCGGGGCCcGGCCCCGGGGaaccc -5'
5792 5' -69.9 NC_001806.1 + 4738 0.82 0.026934
Target:  5'- -cGGCCCCGGGCCGGGGCCCg----- -3'
miRNA:   3'- ccCCGGGGCCCGGCCCCGGGgaaccc -5'
5792 5' -69.9 NC_001806.1 + 111197 0.8 0.032595
Target:  5'- cGGGCCCUGgggauagccugcgcGGCCGGGGCCUCgaugUGGGu -3'
miRNA:   3'- cCCCGGGGC--------------CCGGCCCCGGGGa---ACCC- -5'
5792 5' -69.9 NC_001806.1 + 133004 0.8 0.034502
Target:  5'- --aGCCCUGGGCCGGGGCCgUCUUGGa -3'
miRNA:   3'- cccCGGGGCCCGGCCCCGG-GGAACCc -5'
5792 5' -69.9 NC_001806.1 + 21509 0.8 0.037155
Target:  5'- cGGGCCCCGGcCCGGGGCCgCgaacGGGa -3'
miRNA:   3'- cCCCGGGGCCcGGCCCCGGgGaa--CCC- -5'
5792 5' -69.9 NC_001806.1 + 149823 0.79 0.044147
Target:  5'- cGGGuacucGCUCCGGGgCGGGGCUCCaUGGGg -3'
miRNA:   3'- -CCC-----CGGGGCCCgGCCCCGGGGaACCC- -5'
5792 5' -69.9 NC_001806.1 + 33049 0.78 0.04637
Target:  5'- -aGGCCCCGGGCCGGGaacccggaaaaGCCuCCggGGGg -3'
miRNA:   3'- ccCCGGGGCCCGGCCC-----------CGG-GGaaCCC- -5'
5792 5' -69.9 NC_001806.1 + 59142 0.77 0.055047
Target:  5'- aGGGCagCCGGGCCGGGGUCUCgggUGcGGg -3'
miRNA:   3'- cCCCGg-GGCCCGGCCCCGGGGa--AC-CC- -5'
5792 5' -69.9 NC_001806.1 + 64961 0.77 0.062189
Target:  5'- -cGGCgCCCGGGCCgGGGGUCCCg-GGGc -3'
miRNA:   3'- ccCCG-GGGCCCGG-CCCCGGGGaaCCC- -5'
5792 5' -69.9 NC_001806.1 + 5598 0.77 0.063721
Target:  5'- cGGGGgCCCGuGGCCGcGGCCCgUUGGu -3'
miRNA:   3'- -CCCCgGGGC-CCGGCcCCGGGgAACCc -5'
5792 5' -69.9 NC_001806.1 + 2796 0.77 0.064344
Target:  5'- cGGGGCgCCgCGGGCUGggcgggggcgggcucGGGCCCCggGGGc -3'
miRNA:   3'- -CCCCG-GG-GCCCGGC---------------CCCGGGGaaCCC- -5'
5792 5' -69.9 NC_001806.1 + 122034 0.76 0.06529
Target:  5'- uGGGU--CGGGucgacCCGGGGCCCCUUGGGa -3'
miRNA:   3'- cCCCGggGCCC-----GGCCCCGGGGAACCC- -5'
5792 5' -69.9 NC_001806.1 + 37933 0.76 0.074425
Target:  5'- gGGGccguccguccaccccGCCCCGGGgCGGGGUCCCccaGGGu -3'
miRNA:   3'- -CCC---------------CGGGGCCCgGCCCCGGGGaa-CCC- -5'
5792 5' -69.9 NC_001806.1 + 4426 0.75 0.079249
Target:  5'- gGGGGUggCCCGGGCgGGGGCggcguccgCCCggGGGc -3'
miRNA:   3'- -CCCCG--GGGCCCGgCCCCG--------GGGaaCCC- -5'
5792 5' -69.9 NC_001806.1 + 105744 0.75 0.081184
Target:  5'- cGGGCCCCguggguuaGGGaCGGGGUCCCccaUGGGg -3'
miRNA:   3'- cCCCGGGG--------CCCgGCCCCGGGGa--ACCC- -5'
5792 5' -69.9 NC_001806.1 + 81830 0.75 0.083163
Target:  5'- aGGGCCUgugccaCGGGCgGGaGGgCCCUUGGGu -3'
miRNA:   3'- cCCCGGG------GCCCGgCC-CCgGGGAACCC- -5'
5792 5' -69.9 NC_001806.1 + 147784 0.74 0.096037
Target:  5'- gGGGGCCCgGGGCgGGGGgCggagCCUggcaUGGGc -3'
miRNA:   3'- -CCCCGGGgCCCGgCCCCgG----GGA----ACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.