Results 41 - 60 of 219 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5793 | 3' | -63.2 | NC_001806.1 | + | 79670 | 0.72 | 0.299327 |
Target: 5'- gUCCGGGUCGcGCGCGcGCCgacacCGCCg -3' miRNA: 3'- aGGGCCCGGCaUGCGC-CGGaa---GCGGg -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 106702 | 0.72 | 0.303933 |
Target: 5'- uUCCCGGGCCcccGgGCGGCCcccgguaucgggucUUUGUCCu -3' miRNA: 3'- -AGGGCCCGGca-UgCGCCGG--------------AAGCGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 78782 | 0.72 | 0.303933 |
Target: 5'- cUCgCGGGCCGgACGCcGCCUugcgcgaugccgugUCGUCCg -3' miRNA: 3'- -AGgGCCCGGCaUGCGcCGGA--------------AGCGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 125502 | 0.72 | 0.31263 |
Target: 5'- cCCCGGGCCGcguCGcCGGCaCUUucugaCGCCUc -3' miRNA: 3'- aGGGCCCGGCau-GC-GCCG-GAA-----GCGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 150585 | 0.72 | 0.31263 |
Target: 5'- -aCCGGGaaGUGgGCGGCCcg-GCCCa -3' miRNA: 3'- agGGCCCggCAUgCGCCGGaagCGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 57861 | 0.71 | 0.319448 |
Target: 5'- uUCUuuaGGGCCGUGucCGCGcGCCauccUCGCCCc -3' miRNA: 3'- -AGGg--CCCGGCAU--GCGC-CGGa---AGCGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 137203 | 0.71 | 0.326377 |
Target: 5'- gUUCCGGGaCGUG-GCGGCCUUagaGUCCc -3' miRNA: 3'- -AGGGCCCgGCAUgCGCCGGAAg--CGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 30288 | 0.71 | 0.326377 |
Target: 5'- cCCCGGGgCGga-GcCGGCCgccCGCCCc -3' miRNA: 3'- aGGGCCCgGCaugC-GCCGGaa-GCGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 141422 | 0.71 | 0.331293 |
Target: 5'- gCCgGGGCgGcGCGCGGCCaaccggcggauaacUcCGCCCa -3' miRNA: 3'- aGGgCCCGgCaUGCGCCGG--------------AaGCGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 4741 | 0.71 | 0.333416 |
Target: 5'- cCCCGGGCCGg----GGCCcggUCGCCg -3' miRNA: 3'- aGGGCCCGGCaugcgCCGGa--AGCGGg -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 125699 | 0.71 | 0.333416 |
Target: 5'- gCgCGGGuuGcUGCGCGGCgUccgCGCCCc -3' miRNA: 3'- aGgGCCCggC-AUGCGCCGgAa--GCGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 118760 | 0.71 | 0.333416 |
Target: 5'- cCCCuGGCCGcccugaUGCGCGGCC---GCCCc -3' miRNA: 3'- aGGGcCCGGC------AUGCGCCGGaagCGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 104904 | 0.71 | 0.340567 |
Target: 5'- cCCCaGGCCGUGC-UGGCgUUCgugGCCCu -3' miRNA: 3'- aGGGcCCGGCAUGcGCCGgAAG---CGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 24696 | 0.71 | 0.345638 |
Target: 5'- gCCCGGcCCGgugGCGCgGGCCgcggagggacuuuugCGCCCg -3' miRNA: 3'- aGGGCCcGGCa--UGCG-CCGGaa-------------GCGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 143401 | 0.71 | 0.347828 |
Target: 5'- cCCCGgcGGCCGgguCGCGGCuCUUacgagcgGCCCg -3' miRNA: 3'- aGGGC--CCGGCau-GCGCCG-GAAg------CGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 149846 | 0.71 | 0.347828 |
Target: 5'- cUCCauggGGGUCGUAUGCGGCUggagggUCGCg- -3' miRNA: 3'- -AGGg---CCCGGCAUGCGCCGGa-----AGCGgg -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 73452 | 0.71 | 0.347828 |
Target: 5'- aCCCaGGCCGggguggccgGCcCGGCCgcCGCCCu -3' miRNA: 3'- aGGGcCCGGCa--------UGcGCCGGaaGCGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 46108 | 0.71 | 0.347828 |
Target: 5'- gCCCgGGGCC-UGCGCGggcGCCUcCGCCa -3' miRNA: 3'- aGGG-CCCGGcAUGCGC---CGGAaGCGGg -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 35819 | 0.71 | 0.347828 |
Target: 5'- aCUCGGGCgCGUG-GCGGCCUccuagggucaauUCGCgCg -3' miRNA: 3'- aGGGCCCG-GCAUgCGCCGGA------------AGCGgG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 55491 | 0.71 | 0.355198 |
Target: 5'- -aCCGGGCCaauggguCGCGGCggUCGCaCCa -3' miRNA: 3'- agGGCCCGGcau----GCGCCGgaAGCG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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