Results 41 - 60 of 219 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5793 | 3' | -63.2 | NC_001806.1 | + | 80013 | 0.66 | 0.589862 |
Target: 5'- uUCCCguaggcGGGCCGca-GCGGCgCcuuacgCGCCCc -3' miRNA: 3'- -AGGG------CCCGGCaugCGCCG-Gaa----GCGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 75359 | 0.66 | 0.589862 |
Target: 5'- cCCUGGaCgCGcGgGUGGCCaUCGCCCa -3' miRNA: 3'- aGGGCCcG-GCaUgCGCCGGaAGCGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 106241 | 0.66 | 0.589862 |
Target: 5'- uUCCCGGGCCuggGUaACGUuuucGGCCgUCccugaccccgagGCCCu -3' miRNA: 3'- -AGGGCCCGG---CA-UGCG----CCGGaAG------------CGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 135803 | 0.66 | 0.589862 |
Target: 5'- gUCCUGGcCCGcagaccCGCGGCUguuucCGCCCu -3' miRNA: 3'- -AGGGCCcGGCau----GCGCCGGaa---GCGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 54088 | 0.66 | 0.589862 |
Target: 5'- aCCCaGGCCGcgGCGgGgaGCCga-GCCCg -3' miRNA: 3'- aGGGcCCGGCa-UGCgC--CGGaagCGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 146642 | 0.66 | 0.589862 |
Target: 5'- gUCCCGGGUCG-ACGCccCCUgcUC-CCCg -3' miRNA: 3'- -AGGGCCCGGCaUGCGccGGA--AGcGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 146538 | 0.67 | 0.584111 |
Target: 5'- cCCCGacacggauuGGCUGguguaguggGCGCGGCCagagaccacccagCGCCCg -3' miRNA: 3'- aGGGC---------CCGGCa--------UGCGCCGGaa-----------GCGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 147156 | 0.67 | 0.580283 |
Target: 5'- cUCCCaGGGCac--CGaCGGCCc-CGCCCg -3' miRNA: 3'- -AGGG-CCCGgcauGC-GCCGGaaGCGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 112135 | 0.67 | 0.580283 |
Target: 5'- gUCCuCGGGgCGUuugaGCGCGGCa--CGgCCg -3' miRNA: 3'- -AGG-GCCCgGCA----UGCGCCGgaaGCgGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 143453 | 0.67 | 0.580283 |
Target: 5'- cCCCGGGCCGUGuCcuuGCUUUCcCCCc -3' miRNA: 3'- aGGGCCCGGCAU-GcgcCGGAAGcGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 103929 | 0.67 | 0.580283 |
Target: 5'- -gCCGGGUC--ACGCGGCUgacgcggagCGUCCg -3' miRNA: 3'- agGGCCCGGcaUGCGCCGGaa-------GCGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 43218 | 0.67 | 0.580283 |
Target: 5'- uUCUCgGGGCUaUAUGUGGCUggggagcgCGCCCc -3' miRNA: 3'- -AGGG-CCCGGcAUGCGCCGGaa------GCGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 85510 | 0.67 | 0.580283 |
Target: 5'- gCCCGGG--GUAC-CGGUUcgUCGCCCa -3' miRNA: 3'- aGGGCCCggCAUGcGCCGGa-AGCGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 1329 | 0.67 | 0.570738 |
Target: 5'- uUCCCGccGCgGggGCGUGGCCaa-GCCCg -3' miRNA: 3'- -AGGGCc-CGgCa-UGCGCCGGaagCGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 23932 | 0.67 | 0.570738 |
Target: 5'- -aCCuGGCCGgcgGCGgGGCCUgggggggcCGCCg -3' miRNA: 3'- agGGcCCGGCa--UGCgCCGGAa-------GCGGg -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 112318 | 0.67 | 0.570738 |
Target: 5'- uUCCUGGGCaagGCG-GGCCacCGCCg -3' miRNA: 3'- -AGGGCCCGgcaUGCgCCGGaaGCGGg -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 73705 | 0.67 | 0.570738 |
Target: 5'- aCCUGGaGCUGcagcuucGCGCGGCCc-CGCCg -3' miRNA: 3'- aGGGCC-CGGCa------UGCGCCGGaaGCGGg -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 4311 | 0.67 | 0.570738 |
Target: 5'- gCCCGuGG-CGU-CGCGGCCggccacCGCCg -3' miRNA: 3'- aGGGC-CCgGCAuGCGCCGGaa----GCGGg -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 91401 | 0.67 | 0.561231 |
Target: 5'- gCCCGGGuUCGaGgGuCGGCCcaccgCGCCCc -3' miRNA: 3'- aGGGCCC-GGCaUgC-GCCGGaa---GCGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 26381 | 0.67 | 0.561231 |
Target: 5'- gCCCGccgccGCCGccauCGCGGCCcccgcCGCCCc -3' miRNA: 3'- aGGGCc----CGGCau--GCGCCGGaa---GCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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