miRNA display CGI


Results 21 - 40 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5793 3' -63.2 NC_001806.1 + 24339 0.66 0.618737
Target:  5'- cCUCGGGCCGcguguucgGCccgGgGGUCUUCGCgCg -3'
miRNA:   3'- aGGGCCCGGCa-------UG---CgCCGGAAGCGgG- -5'
5793 3' -63.2 NC_001806.1 + 93870 0.66 0.618737
Target:  5'- cUCCCGGcuuGCCGgucgGCG-GGCCcgcgggaggcCGCCCc -3'
miRNA:   3'- -AGGGCC---CGGCa---UGCgCCGGaa--------GCGGG- -5'
5793 3' -63.2 NC_001806.1 + 145721 0.66 0.618737
Target:  5'- gCCCaccuGGCCGcgcgggUGCGCGuGCCUUUGCacaCCa -3'
miRNA:   3'- aGGGc---CCGGC------AUGCGC-CGGAAGCG---GG- -5'
5793 3' -63.2 NC_001806.1 + 30857 0.66 0.618737
Target:  5'- cUUCUGGGCCGcg-GgGGCCgaggaagugUGCCCg -3'
miRNA:   3'- -AGGGCCCGGCaugCgCCGGaa-------GCGGG- -5'
5793 3' -63.2 NC_001806.1 + 43500 0.66 0.617772
Target:  5'- -aCgGGGCCGUG-GCGGCCcaucaggacaagaUgcggCGCCUg -3'
miRNA:   3'- agGgCCCGGCAUgCGCCGG-------------Aa---GCGGG- -5'
5793 3' -63.2 NC_001806.1 + 75241 0.66 0.615843
Target:  5'- gUCCUGgucgacgcggugacGGCCcuggGCGCGGCCgccagCGaCCCg -3'
miRNA:   3'- -AGGGC--------------CCGGca--UGCGCCGGaa---GC-GGG- -5'
5793 3' -63.2 NC_001806.1 + 151513 0.66 0.609094
Target:  5'- aCCUGGGaCUGUGCGguUGGgaCggCGCCCg -3'
miRNA:   3'- aGGGCCC-GGCAUGC--GCCg-GaaGCGGG- -5'
5793 3' -63.2 NC_001806.1 + 107516 0.66 0.609094
Target:  5'- cUUCCGGaccacuuuucGCCaUGCGCGGCCUcccugCGCUUu -3'
miRNA:   3'- -AGGGCC----------CGGcAUGCGCCGGAa----GCGGG- -5'
5793 3' -63.2 NC_001806.1 + 10540 0.66 0.607167
Target:  5'- -aCCGaGGCCacUugGCGaGCCggguccuuuaugUCGCCCa -3'
miRNA:   3'- agGGC-CCGGc-AugCGC-CGGa-----------AGCGGG- -5'
5793 3' -63.2 NC_001806.1 + 30386 0.66 0.599467
Target:  5'- -gCCGGGCgCGUGCGaCGGUgg-CGCgCg -3'
miRNA:   3'- agGGCCCG-GCAUGC-GCCGgaaGCGgG- -5'
5793 3' -63.2 NC_001806.1 + 125852 0.66 0.599467
Target:  5'- cCCCcGGCCGc-CGCGgacGCCguggCGCCCc -3'
miRNA:   3'- aGGGcCCGGCauGCGC---CGGaa--GCGGG- -5'
5793 3' -63.2 NC_001806.1 + 37529 0.66 0.599467
Target:  5'- gCUCGGGCCGUGgGCGaCCaaggUUuCCCa -3'
miRNA:   3'- aGGGCCCGGCAUgCGCcGGa---AGcGGG- -5'
5793 3' -63.2 NC_001806.1 + 111201 0.66 0.599467
Target:  5'- cCCUGGggauaGCC-UGCGCGGCCgggGCCUc -3'
miRNA:   3'- aGGGCC-----CGGcAUGCGCCGGaagCGGG- -5'
5793 3' -63.2 NC_001806.1 + 32942 0.66 0.599467
Target:  5'- -gCCGGGCCGUugugGgGCcccgGGCCgggGCCCc -3'
miRNA:   3'- agGGCCCGGCA----UgCG----CCGGaagCGGG- -5'
5793 3' -63.2 NC_001806.1 + 109407 0.66 0.599467
Target:  5'- aCCCggcgauGGGUCGUgggGCGCGGCg---GCCCg -3'
miRNA:   3'- aGGG------CCCGGCA---UGCGCCGgaagCGGG- -5'
5793 3' -63.2 NC_001806.1 + 99200 0.66 0.599467
Target:  5'- cCCCGGG-UGUcCGCGGCCUguuUCCu -3'
miRNA:   3'- aGGGCCCgGCAuGCGCCGGAagcGGG- -5'
5793 3' -63.2 NC_001806.1 + 146642 0.66 0.589862
Target:  5'- gUCCCGGGUCG-ACGCccCCUgcUC-CCCg -3'
miRNA:   3'- -AGGGCCCGGCaUGCGccGGA--AGcGGG- -5'
5793 3' -63.2 NC_001806.1 + 152053 0.66 0.589862
Target:  5'- gCCCGGaccGCCGcccgccuuuuuUGCGCGcGCgcgCGCCCg -3'
miRNA:   3'- aGGGCC---CGGC-----------AUGCGC-CGgaaGCGGG- -5'
5793 3' -63.2 NC_001806.1 + 95298 0.66 0.589862
Target:  5'- ---gGGGCgGgggGCGCGGCggacgCGCCCa -3'
miRNA:   3'- agggCCCGgCa--UGCGCCGgaa--GCGGG- -5'
5793 3' -63.2 NC_001806.1 + 75359 0.66 0.589862
Target:  5'- cCCUGGaCgCGcGgGUGGCCaUCGCCCa -3'
miRNA:   3'- aGGGCCcG-GCaUgCGCCGGaAGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.