Results 41 - 60 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5793 | 5' | -49.9 | NC_001806.1 | + | 96506 | 0.68 | 0.988241 |
Target: 5'- gGCGG-CGAACGggGgcccugcCAcUCCGGCGcCg -3' miRNA: 3'- -UGUCuGCUUGCuuU-------GUaAGGCCGCuG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 131946 | 0.68 | 0.986819 |
Target: 5'- gGCGGGCGcuguACGcguGCGUcCUGGCGGCc -3' miRNA: 3'- -UGUCUGCu---UGCuu-UGUAaGGCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 65635 | 0.68 | 0.986819 |
Target: 5'- -uGGGCGAGaGggGCc--CCGGCGGCc -3' miRNA: 3'- ugUCUGCUUgCuuUGuaaGGCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 65757 | 0.68 | 0.986819 |
Target: 5'- aACAGACGcGGCGG---GUUUCGGCGGg -3' miRNA: 3'- -UGUCUGC-UUGCUuugUAAGGCCGCUg -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 108503 | 0.68 | 0.986486 |
Target: 5'- -gAGACGAACGGuaagaAGCAcauccagguacCCGGCGGCc -3' miRNA: 3'- ugUCUGCUUGCU-----UUGUaa---------GGCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 20726 | 0.68 | 0.985088 |
Target: 5'- cCGGGgGGGCGggGgg--CCGGCGGCc -3' miRNA: 3'- uGUCUgCUUGCuuUguaaGGCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 126130 | 0.68 | 0.98319 |
Target: 5'- cGCGGACGAcggcgGCGAGGCcggcgCCGacacGCGGCg -3' miRNA: 3'- -UGUCUGCU-----UGCUUUGuaa--GGC----CGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 95074 | 0.68 | 0.98319 |
Target: 5'- gGCGG-CGGGCGGAGCAUUUCGaucGCG-Cg -3' miRNA: 3'- -UGUCuGCUUGCUUUGUAAGGC---CGCuG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 83265 | 0.68 | 0.98319 |
Target: 5'- gGCGGGCG-ACGGAggGgGUUCgGGCGGg -3' miRNA: 3'- -UGUCUGCuUGCUU--UgUAAGgCCGCUg -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 68254 | 0.69 | 0.981114 |
Target: 5'- -gGGGCGGACGAcccGGCGUUuCUGGCcACg -3' miRNA: 3'- ugUCUGCUUGCU---UUGUAA-GGCCGcUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 77380 | 0.69 | 0.976395 |
Target: 5'- cCAGACGGGCGcGGGCG---CGGCGGCc -3' miRNA: 3'- uGUCUGCUUGC-UUUGUaagGCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 52869 | 0.69 | 0.976395 |
Target: 5'- gACAGGCGAccgccgGCGGcGACGUgccccuccucgUCCGGCGcGCg -3' miRNA: 3'- -UGUCUGCU------UGCU-UUGUA-----------AGGCCGC-UG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 151189 | 0.69 | 0.973736 |
Target: 5'- cGCAGGCGGaggGCGAGGCG---CGGCGGa -3' miRNA: 3'- -UGUCUGCU---UGCUUUGUaagGCCGCUg -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 147187 | 0.69 | 0.973736 |
Target: 5'- gGCGGaaGCGGAgGAGgacGCGgccCCGGCGGCg -3' miRNA: 3'- -UGUC--UGCUUgCUU---UGUaa-GGCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 23917 | 0.69 | 0.973736 |
Target: 5'- cGCuGcCGGGCGAGGaccuggCCGGCGGCg -3' miRNA: 3'- -UGuCuGCUUGCUUUguaa--GGCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 121022 | 0.69 | 0.973736 |
Target: 5'- gGCGGACGAGCGGcuCAagaucUUUCGGUGuCu -3' miRNA: 3'- -UGUCUGCUUGCUuuGU-----AAGGCCGCuG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 100301 | 0.7 | 0.964804 |
Target: 5'- cGCGGAaugcggcugggguugGGGCGcgGCAUggCCGGCGACg -3' miRNA: 3'- -UGUCUg--------------CUUGCuuUGUAa-GGCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 59882 | 0.7 | 0.960917 |
Target: 5'- cCGGACGGACGAGGagg-CCaGUGACg -3' miRNA: 3'- uGUCUGCUUGCUUUguaaGGcCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 25903 | 0.7 | 0.960917 |
Target: 5'- -aAGGCGGGCG--GCggUCCGgGCGGCg -3' miRNA: 3'- ugUCUGCUUGCuuUGuaAGGC-CGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 4849 | 0.7 | 0.960917 |
Target: 5'- uCGGGCGu-CGGGAUcgUCCGGaCGGCc -3' miRNA: 3'- uGUCUGCuuGCUUUGuaAGGCC-GCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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