Results 21 - 40 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5793 | 5' | -49.9 | NC_001806.1 | + | 33191 | 1.11 | 0.008608 |
Target: 5'- gACAGACGAACGAAACAUUCCGGCGACg -3' miRNA: 3'- -UGUCUGCUUGCUUUGUAAGGCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 40028 | 0.72 | 0.923663 |
Target: 5'- aACGGACG-GCGAGcaugGCGUgCCGGCGuCa -3' miRNA: 3'- -UGUCUGCuUGCUU----UGUAaGGCCGCuG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 46505 | 0.67 | 0.994932 |
Target: 5'- cACAGACGAagaccucaACGAAcuccuugGCAUcaccaccaUCCGcGUGACg -3' miRNA: 3'- -UGUCUGCU--------UGCUU-------UGUA--------AGGC-CGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 48284 | 0.67 | 0.995009 |
Target: 5'- cCGGACG-ACGAcgcccccgaagaGGCGgggCUGGCGGCu -3' miRNA: 3'- uGUCUGCuUGCU------------UUGUaa-GGCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 51339 | 0.66 | 0.996359 |
Target: 5'- cGCGGGCguucccGAGCGgcGCAUcUUCGGCGGg -3' miRNA: 3'- -UGUCUG------CUUGCuuUGUA-AGGCCGCUg -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 51588 | 0.67 | 0.995009 |
Target: 5'- cCAGGCGcugGGCGAgguggAGCugcCCGGCGGCc -3' miRNA: 3'- uGUCUGC---UUGCU-----UUGuaaGGCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 52541 | 0.68 | 0.989813 |
Target: 5'- cCGGACGAcgugguccGCGggGCcucccCCGGaCGACa -3' miRNA: 3'- uGUCUGCU--------UGCuuUGuaa--GGCC-GCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 52727 | 0.67 | 0.993277 |
Target: 5'- cGCGGACGGcGCGggGCccccgcUUCCGGauGCg -3' miRNA: 3'- -UGUCUGCU-UGCuuUGu-----AAGGCCgcUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 52869 | 0.69 | 0.976395 |
Target: 5'- gACAGGCGAccgccgGCGGcGACGUgccccuccucgUCCGGCGcGCg -3' miRNA: 3'- -UGUCUGCU------UGCU-UUGUA-----------AGGCCGC-UG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 59882 | 0.7 | 0.960917 |
Target: 5'- cCGGACGGACGAGGagg-CCaGUGACg -3' miRNA: 3'- uGUCUGCUUGCUUUguaaGGcCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 63358 | 0.71 | 0.944312 |
Target: 5'- cCGGAUGGACGAucucgguGCAgagguuggagCCGGCGAUg -3' miRNA: 3'- uGUCUGCUUGCUu------UGUaa--------GGCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 63927 | 0.67 | 0.991096 |
Target: 5'- uGCGGGCGAggAUGGcacuGACGUUgCUGGUGAUg -3' miRNA: 3'- -UGUCUGCU--UGCU----UUGUAA-GGCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 65635 | 0.68 | 0.986819 |
Target: 5'- -uGGGCGAGaGggGCc--CCGGCGGCc -3' miRNA: 3'- ugUCUGCUUgCuuUGuaaGGCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 65757 | 0.68 | 0.986819 |
Target: 5'- aACAGACGcGGCGG---GUUUCGGCGGg -3' miRNA: 3'- -UGUCUGC-UUGCUuugUAAGGCCGCUg -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 66427 | 0.67 | 0.991096 |
Target: 5'- uGCGGugGGGCGcccccGCAggUCCGGCuGCc -3' miRNA: 3'- -UGUCugCUUGCuu---UGUa-AGGCCGcUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 66811 | 0.67 | 0.995009 |
Target: 5'- cACGGcCGAGCGggGCcggCCcgGGUGGCc -3' miRNA: 3'- -UGUCuGCUUGCuuUGuaaGG--CCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 68254 | 0.69 | 0.981114 |
Target: 5'- -gGGGCGGACGAcccGGCGUUuCUGGCcACg -3' miRNA: 3'- ugUCUGCUUGCU---UUGUAA-GGCCGcUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 68340 | 0.81 | 0.503605 |
Target: 5'- gGCAGACGcGCGGGACug-CUGGCGGCc -3' miRNA: 3'- -UGUCUGCuUGCUUUGuaaGGCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 69591 | 0.67 | 0.993277 |
Target: 5'- cACGGGCGGcucuGCGAGGCGgucggccugUCgGGgGGCg -3' miRNA: 3'- -UGUCUGCU----UGCUUUGUa--------AGgCCgCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 73136 | 0.72 | 0.911792 |
Target: 5'- gGCGGGCGAggACGAcgGGCccacgGUUCCGGCGuCc -3' miRNA: 3'- -UGUCUGCU--UGCU--UUG-----UAAGGCCGCuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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