miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5793 5' -49.9 NC_001806.1 + 1640 0.71 0.947505
Target:  5'- cGCAGGCGGcguGCGAGugggccuccuccucGCAgaagUCCGGCG-Cg -3'
miRNA:   3'- -UGUCUGCU---UGCUU--------------UGUa---AGGCCGCuG- -5'
5793 5' -49.9 NC_001806.1 + 2271 0.67 0.994195
Target:  5'- gACAGcccgccGCGcucGGCGGAcCAcUCCGGCGGCc -3'
miRNA:   3'- -UGUC------UGC---UUGCUUuGUaAGGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 2436 0.66 0.997394
Target:  5'- cGCAGGgGGccaaaGAGGCGgcccCCGGCGGCc -3'
miRNA:   3'- -UGUCUgCUug---CUUUGUaa--GGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 3284 0.71 0.929212
Target:  5'- cGCAGGCGGggcGCGucGGCGUg-CGGCGGCg -3'
miRNA:   3'- -UGUCUGCU---UGCu-UUGUAagGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 4736 0.66 0.997811
Target:  5'- cGCGGcccCGGGcCGggGCccggucgCCGGCGGCg -3'
miRNA:   3'- -UGUCu--GCUU-GCuuUGuaa----GGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 4849 0.7 0.960917
Target:  5'- uCGGGCGu-CGGGAUcgUCCGGaCGGCc -3'
miRNA:   3'- uGUCUGCuuGCUUUGuaAGGCC-GCUG- -5'
5793 5' -49.9 NC_001806.1 + 5372 0.66 0.997394
Target:  5'- gGCGcGGCGAGCGucuGACGgucugucUCUGGCGGu -3'
miRNA:   3'- -UGU-CUGCUUGCu--UUGUa------AGGCCGCUg -5'
5793 5' -49.9 NC_001806.1 + 10082 0.73 0.892076
Target:  5'- uGCGGACGGccagGCGAGACGUccacguacUCgCGGCGcACg -3'
miRNA:   3'- -UGUCUGCU----UGCUUUGUA--------AG-GCCGC-UG- -5'
5793 5' -49.9 NC_001806.1 + 15973 0.67 0.994195
Target:  5'- -gGGGCGuugguguCG-AugGUUCCGGCGAUu -3'
miRNA:   3'- ugUCUGCuu-----GCuUugUAAGGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 18373 0.75 0.783209
Target:  5'- gGCAGGCGGugGAGaagcGCAUuuUCCGGCaGCc -3'
miRNA:   3'- -UGUCUGCUugCUU----UGUA--AGGCCGcUG- -5'
5793 5' -49.9 NC_001806.1 + 18627 0.66 0.997811
Target:  5'- uCGGACugGGACGcGAGCGUgugguccgaaCCGGCGGCc -3'
miRNA:   3'- uGUCUG--CUUGC-UUUGUAa---------GGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 20252 0.67 0.992981
Target:  5'- -gGGACGAaguGCGAAcgcuucGCGUUcucacuucuuuuacCCGGCGGCc -3'
miRNA:   3'- ugUCUGCU---UGCUU------UGUAA--------------GGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 20395 0.67 0.994195
Target:  5'- --cGGCGGGCGGGACcggggggcCCGGgGACg -3'
miRNA:   3'- uguCUGCUUGCUUUGuaa-----GGCCgCUG- -5'
5793 5' -49.9 NC_001806.1 + 20726 0.68 0.985088
Target:  5'- cCGGGgGGGCGggGgg--CCGGCGGCc -3'
miRNA:   3'- uGUCUgCUUGCuuUguaaGGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 21471 0.7 0.957134
Target:  5'- -gGGACGAguACGAcgacgcagccGACGccgCCGGCGACc -3'
miRNA:   3'- ugUCUGCU--UGCU----------UUGUaa-GGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 23917 0.69 0.973736
Target:  5'- cGCuGcCGGGCGAGGaccuggCCGGCGGCg -3'
miRNA:   3'- -UGuCuGCUUGCUUUguaa--GGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 25712 0.67 0.993277
Target:  5'- -uGGAgGAGCGGGAgGUgCgCGGUGACg -3'
miRNA:   3'- ugUCUgCUUGCUUUgUAaG-GCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 25903 0.7 0.960917
Target:  5'- -aAGGCGGGCG--GCggUCCGgGCGGCg -3'
miRNA:   3'- ugUCUGCUUGCuuUGuaAGGC-CGCUG- -5'
5793 5' -49.9 NC_001806.1 + 26996 0.66 0.997394
Target:  5'- aGCGGGCcGACcGGGCucgGUUCCGGCGcCg -3'
miRNA:   3'- -UGUCUGcUUGcUUUG---UAAGGCCGCuG- -5'
5793 5' -49.9 NC_001806.1 + 29676 0.73 0.86237
Target:  5'- gGCGGGCGGGCGAGgaaaggGCGggCCGGgGAg -3'
miRNA:   3'- -UGUCUGCUUGCUU------UGUaaGGCCgCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.