miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5793 5' -49.9 NC_001806.1 + 33191 1.11 0.008608
Target:  5'- gACAGACGAACGAAACAUUCCGGCGACg -3'
miRNA:   3'- -UGUCUGCUUGCUUUGUAAGGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 68340 0.81 0.503605
Target:  5'- gGCAGACGcGCGGGACug-CUGGCGGCc -3'
miRNA:   3'- -UGUCUGCuUGCUUUGuaaGGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 18373 0.75 0.783209
Target:  5'- gGCAGGCGGugGAGaagcGCAUuuUCCGGCaGCc -3'
miRNA:   3'- -UGUCUGCUugCUU----UGUA--AGGCCGcUG- -5'
5793 5' -49.9 NC_001806.1 + 93564 0.74 0.854368
Target:  5'- -aGGACGAcaacGCGAcGCcgUUCGGCGGCc -3'
miRNA:   3'- ugUCUGCU----UGCUuUGuaAGGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 29676 0.73 0.86237
Target:  5'- gGCGGGCGGGCGAGgaaaggGCGggCCGGgGAg -3'
miRNA:   3'- -UGUCUGCUUGCUU------UGUaaGGCCgCUg -5'
5793 5' -49.9 NC_001806.1 + 10082 0.73 0.892076
Target:  5'- uGCGGACGGccagGCGAGACGUccacguacUCgCGGCGcACg -3'
miRNA:   3'- -UGUCUGCU----UGCUUUGUA--------AG-GCCGC-UG- -5'
5793 5' -49.9 NC_001806.1 + 73136 0.72 0.911792
Target:  5'- gGCGGGCGAggACGAcgGGCccacgGUUCCGGCGuCc -3'
miRNA:   3'- -UGUCUGCU--UGCU--UUG-----UAAGGCCGCuG- -5'
5793 5' -49.9 NC_001806.1 + 40028 0.72 0.923663
Target:  5'- aACGGACG-GCGAGcaugGCGUgCCGGCGuCa -3'
miRNA:   3'- -UGUCUGCuUGCUU----UGUAaGGCCGCuG- -5'
5793 5' -49.9 NC_001806.1 + 3284 0.71 0.929212
Target:  5'- cGCAGGCGGggcGCGucGGCGUg-CGGCGGCg -3'
miRNA:   3'- -UGUCUGCU---UGCu-UUGUAagGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 91004 0.71 0.944312
Target:  5'- -gGGGCGGGCGcGACGg--CGGCGGCa -3'
miRNA:   3'- ugUCUGCUUGCuUUGUaagGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 77295 0.71 0.944312
Target:  5'- cAUGGGCGGugGAGGaGUUCCGG-GGCg -3'
miRNA:   3'- -UGUCUGCUugCUUUgUAAGGCCgCUG- -5'
5793 5' -49.9 NC_001806.1 + 63358 0.71 0.944312
Target:  5'- cCGGAUGGACGAucucgguGCAgagguuggagCCGGCGAUg -3'
miRNA:   3'- uGUCUGCUUGCUu------UGUaa--------GGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 1640 0.71 0.947505
Target:  5'- cGCAGGCGGcguGCGAGugggccuccuccucGCAgaagUCCGGCG-Cg -3'
miRNA:   3'- -UGUCUGCU---UGCUU--------------UGUa---AGGCCGCuG- -5'
5793 5' -49.9 NC_001806.1 + 95486 0.7 0.953108
Target:  5'- cGCGGACGuGCgGGAGCGa--CGGCGGCu -3'
miRNA:   3'- -UGUCUGCuUG-CUUUGUaagGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 119732 0.7 0.957134
Target:  5'- cGCGGAUGG--GAAGCccuggCCGGCGGCg -3'
miRNA:   3'- -UGUCUGCUugCUUUGuaa--GGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 143378 0.7 0.957134
Target:  5'- gGCAGACcGACGGcGACAacgcuccCCGGCGGCc -3'
miRNA:   3'- -UGUCUGcUUGCU-UUGUaa-----GGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 21471 0.7 0.957134
Target:  5'- -gGGACGAguACGAcgacgcagccGACGccgCCGGCGACc -3'
miRNA:   3'- ugUCUGCU--UGCU----------UUGUaa-GGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 4849 0.7 0.960917
Target:  5'- uCGGGCGu-CGGGAUcgUCCGGaCGGCc -3'
miRNA:   3'- uGUCUGCuuGCUUUGuaAGGCC-GCUG- -5'
5793 5' -49.9 NC_001806.1 + 25903 0.7 0.960917
Target:  5'- -aAGGCGGGCG--GCggUCCGgGCGGCg -3'
miRNA:   3'- ugUCUGCUUGCuuUGuaAGGC-CGCUG- -5'
5793 5' -49.9 NC_001806.1 + 59882 0.7 0.960917
Target:  5'- cCGGACGGACGAGGagg-CCaGUGACg -3'
miRNA:   3'- uGUCUGCUUGCUUUguaaGGcCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.