miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5803 5' -58.7 NC_001806.1 + 2016 0.68 0.662925
Target:  5'- uGCCGCgaCACCGcgggCC-CGucGGCGGGCCAg -3'
miRNA:   3'- -CGGCG--GUGGUa---GGaGU--UCGUCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 23255 0.68 0.662925
Target:  5'- gGCCGCCGCCG-CCUCc-GCcGcGCCGc -3'
miRNA:   3'- -CGGCGGUGGUaGGAGuuCGuC-CGGUa -5'
5803 5' -58.7 NC_001806.1 + 81776 0.68 0.662925
Target:  5'- cCCGCCGCCAaaaCgagcgCGGGgGGGCCAa -3'
miRNA:   3'- cGGCGGUGGUag-Ga----GUUCgUCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 86342 0.68 0.661906
Target:  5'- -aCGCCugCAgucCCUCGGGCAGgggucgcGCCAg -3'
miRNA:   3'- cgGCGGugGUa--GGAGUUCGUC-------CGGUa -5'
5803 5' -58.7 NC_001806.1 + 12893 0.68 0.652729
Target:  5'- cGgCGCCACCguccccacgggGUCCUcCAAGaGGGCCGa -3'
miRNA:   3'- -CgGCGGUGG-----------UAGGA-GUUCgUCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 87378 0.68 0.652729
Target:  5'- gGCCGCUcCuCGUCCUCccGGGCugcGGCCGg -3'
miRNA:   3'- -CGGCGGuG-GUAGGAG--UUCGu--CCGGUa -5'
5803 5' -58.7 NC_001806.1 + 103029 0.68 0.652729
Target:  5'- gGCCGCCGCCGUCUcCAGcGCcuccaGGGCg-- -3'
miRNA:   3'- -CGGCGGUGGUAGGaGUU-CG-----UCCGgua -5'
5803 5' -58.7 NC_001806.1 + 124492 0.68 0.641495
Target:  5'- uGCUGCggucggaCGCCGUCucgCUCcGGCGGGCCGUc -3'
miRNA:   3'- -CGGCG-------GUGGUAG---GAGuUCGUCCGGUA- -5'
5803 5' -58.7 NC_001806.1 + 70980 0.68 0.632296
Target:  5'- cGCCGCgGCCAUCCgagAGGUAauGGCgCAUg -3'
miRNA:   3'- -CGGCGgUGGUAGGag-UUCGU--CCG-GUA- -5'
5803 5' -58.7 NC_001806.1 + 60034 0.68 0.622076
Target:  5'- uGCCGuCCGCCGcgcCCUCgAAGCcGGCCc- -3'
miRNA:   3'- -CGGC-GGUGGUa--GGAG-UUCGuCCGGua -5'
5803 5' -58.7 NC_001806.1 + 119462 0.69 0.601665
Target:  5'- cGCCGCCACCcgGUCCgagcgcggacCGGGCGugcGGCCu- -3'
miRNA:   3'- -CGGCGGUGG--UAGGa---------GUUCGU---CCGGua -5'
5803 5' -58.7 NC_001806.1 + 100157 0.69 0.601665
Target:  5'- cGCgGCUAUCugcgCCUCGAGUGGGCUg- -3'
miRNA:   3'- -CGgCGGUGGua--GGAGUUCGUCCGGua -5'
5803 5' -58.7 NC_001806.1 + 4389 0.69 0.59149
Target:  5'- cGCCGCCGCCcggggCUUggGCGcGGCCu- -3'
miRNA:   3'- -CGGCGGUGGuag--GAGuuCGU-CCGGua -5'
5803 5' -58.7 NC_001806.1 + 1719 0.69 0.59149
Target:  5'- cGCCGCCcgGCCGUCCagCGccggcAGCAcGGCCc- -3'
miRNA:   3'- -CGGCGG--UGGUAGGa-GU-----UCGU-CCGGua -5'
5803 5' -58.7 NC_001806.1 + 3198 0.69 0.59149
Target:  5'- cGCUGCCGCCggccacgcgcagGUCCcCGcGCAGGCgCAUg -3'
miRNA:   3'- -CGGCGGUGG------------UAGGaGUuCGUCCG-GUA- -5'
5803 5' -58.7 NC_001806.1 + 3040 0.69 0.581344
Target:  5'- gGCCGCCGCCG-CCagCAGggggcGCAGGCUc- -3'
miRNA:   3'- -CGGCGGUGGUaGGa-GUU-----CGUCCGGua -5'
5803 5' -58.7 NC_001806.1 + 2320 0.69 0.581344
Target:  5'- cGCCGCCgGCCAggUCCUCGcccGGCAgcGGCgAg -3'
miRNA:   3'- -CGGCGG-UGGU--AGGAGU---UCGU--CCGgUa -5'
5803 5' -58.7 NC_001806.1 + 151714 0.69 0.571235
Target:  5'- cGCCGCCACCG-CUUUAAa-GGGCCGc -3'
miRNA:   3'- -CGGCGGUGGUaGGAGUUcgUCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 57968 0.69 0.571235
Target:  5'- cCCGCCucuCCcgCC-CGGGCAGcGCCAUc -3'
miRNA:   3'- cGGCGGu--GGuaGGaGUUCGUC-CGGUA- -5'
5803 5' -58.7 NC_001806.1 + 4 0.69 0.571235
Target:  5'- cGCCGCCACCG-CUUUAAa-GGGCCGc -3'
miRNA:   3'- -CGGCGGUGGUaGGAGUUcgUCCGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.