miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5803 5' -58.7 NC_001806.1 + 97312 0.81 0.12332
Target:  5'- cGCCGCCgACCG-CUUCAAGCAGGUCGa -3'
miRNA:   3'- -CGGCGG-UGGUaGGAGUUCGUCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 119889 0.75 0.293943
Target:  5'- uCCGCUGCUGUCCUCGGcGCuGGCCAc -3'
miRNA:   3'- cGGCGGUGGUAGGAGUU-CGuCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 63114 0.74 0.307847
Target:  5'- uCCaGCC-CCAgCUUCAGGCAGGCCGUg -3'
miRNA:   3'- cGG-CGGuGGUaGGAGUUCGUCCGGUA- -5'
5803 5' -58.7 NC_001806.1 + 2929 0.74 0.322249
Target:  5'- gGCCGCCGCC-UCCgggCGGcCGGGCCGg -3'
miRNA:   3'- -CGGCGGUGGuAGGa--GUUcGUCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 30780 0.74 0.322249
Target:  5'- cGCUuCCGCC-UCCUCGGGCGgGGCCGUc -3'
miRNA:   3'- -CGGcGGUGGuAGGAGUUCGU-CCGGUA- -5'
5803 5' -58.7 NC_001806.1 + 2706 0.73 0.35963
Target:  5'- uGCCGCCGCCAgccgCCcagggggUCGgggcccucGGCGGGCCGg -3'
miRNA:   3'- -CGGCGGUGGUa---GG-------AGU--------UCGUCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 89316 0.73 0.384797
Target:  5'- gGCCGCCgACUuUCCUCcgggggacAGCGGGCCGc -3'
miRNA:   3'- -CGGCGG-UGGuAGGAGu-------UCGUCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 26974 0.72 0.436696
Target:  5'- cGCCGCgGCuCGUgggCCcgCGAGCGGGCCGa -3'
miRNA:   3'- -CGGCGgUG-GUA---GGa-GUUCGUCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 72596 0.71 0.44301
Target:  5'- cGCCGCCACCGaCC-CGGGCccgucgcgacgacaGGGCCu- -3'
miRNA:   3'- -CGGCGGUGGUaGGaGUUCG--------------UCCGGua -5'
5803 5' -58.7 NC_001806.1 + 63827 0.71 0.443916
Target:  5'- cGCCGCCACCAgcgagucaaggaCCUUgaGGGCGGGCa-- -3'
miRNA:   3'- -CGGCGGUGGUa-----------GGAG--UUCGUCCGgua -5'
5803 5' -58.7 NC_001806.1 + 84570 0.71 0.473447
Target:  5'- cCCGCCAcCCAUCCcgaCGAGCugcugcuccacaAGGCCAa -3'
miRNA:   3'- cGGCGGU-GGUAGGa--GUUCG------------UCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 2497 0.71 0.473447
Target:  5'- cGCCGCCGCCGcacgcggCCUgGgcggcgggGGCGGGCCc- -3'
miRNA:   3'- -CGGCGGUGGUa------GGAgU--------UCGUCCGGua -5'
5803 5' -58.7 NC_001806.1 + 83438 0.71 0.473447
Target:  5'- aCCGCCuCUcgCCUCAguGGguGGCCGa -3'
miRNA:   3'- cGGCGGuGGuaGGAGU--UCguCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 90595 0.71 0.482878
Target:  5'- gGUCGUUACCGagggCUUCAAGgAGGCCGUg -3'
miRNA:   3'- -CGGCGGUGGUa---GGAGUUCgUCCGGUA- -5'
5803 5' -58.7 NC_001806.1 + 20364 0.7 0.508776
Target:  5'- gGCCGcCCGCCGUCCcguuggucccggcgUCcGGCGGGCgGg -3'
miRNA:   3'- -CGGC-GGUGGUAGG--------------AGuUCGUCCGgUa -5'
5803 5' -58.7 NC_001806.1 + 41700 0.7 0.51169
Target:  5'- uGCCGcCCGCCguGUCCUCcccgggacuGGCGGGCgCAa -3'
miRNA:   3'- -CGGC-GGUGG--UAGGAGu--------UCGUCCG-GUa -5'
5803 5' -58.7 NC_001806.1 + 79128 0.7 0.51169
Target:  5'- -gCGCgaGCUAUCCUCGGGC-GGCCGUu -3'
miRNA:   3'- cgGCGg-UGGUAGGAGUUCGuCCGGUA- -5'
5803 5' -58.7 NC_001806.1 + 53772 0.7 0.51169
Target:  5'- cGCCGaCGCCGUCgacgagccgCAGGCAGGCCc- -3'
miRNA:   3'- -CGGCgGUGGUAGga-------GUUCGUCCGGua -5'
5803 5' -58.7 NC_001806.1 + 75654 0.7 0.521453
Target:  5'- gGCCGCCACCGccgaCCUCAgagagaagauGGCGGcCCAg -3'
miRNA:   3'- -CGGCGGUGGUa---GGAGU----------UCGUCcGGUa -5'
5803 5' -58.7 NC_001806.1 + 51628 0.7 0.541189
Target:  5'- aGCCG-CGCCAUCCUCAcGCAGuaCu- -3'
miRNA:   3'- -CGGCgGUGGUAGGAGUuCGUCcgGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.