miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5803 5' -58.7 NC_001806.1 + 4 0.69 0.571235
Target:  5'- cGCCGCCACCG-CUUUAAa-GGGCCGc -3'
miRNA:   3'- -CGGCGGUGGUaGGAGUUcgUCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 1286 0.67 0.673096
Target:  5'- cGCCGCCGUCGUCUUCGuccCAGGCg-- -3'
miRNA:   3'- -CGGCGGUGGUAGGAGUuc-GUCCGgua -5'
5803 5' -58.7 NC_001806.1 + 1386 0.66 0.742863
Target:  5'- cGCCGCCGCCAgcacggugCCgcugcGGCccguGGCCGa -3'
miRNA:   3'- -CGGCGGUGGUa-------GGagu--UCGu---CCGGUa -5'
5803 5' -58.7 NC_001806.1 + 1719 0.69 0.59149
Target:  5'- cGCCGCCcgGCCGUCCagCGccggcAGCAcGGCCc- -3'
miRNA:   3'- -CGGCGG--UGGUAGGa-GU-----UCGU-CCGGua -5'
5803 5' -58.7 NC_001806.1 + 2016 0.68 0.662925
Target:  5'- uGCCGCgaCACCGcgggCC-CGucGGCGGGCCAg -3'
miRNA:   3'- -CGGCG--GUGGUa---GGaGU--UCGUCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 2320 0.69 0.581344
Target:  5'- cGCCGCCgGCCAggUCCUCGcccGGCAgcGGCgAg -3'
miRNA:   3'- -CGGCGG-UGGU--AGGAGU---UCGU--CCGgUa -5'
5803 5' -58.7 NC_001806.1 + 2497 0.71 0.473447
Target:  5'- cGCCGCCGCCGcacgcggCCUgGgcggcgggGGCGGGCCc- -3'
miRNA:   3'- -CGGCGGUGGUa------GGAgU--------UCGUCCGGua -5'
5803 5' -58.7 NC_001806.1 + 2706 0.73 0.35963
Target:  5'- uGCCGCCGCCAgccgCCcagggggUCGgggcccucGGCGGGCCGg -3'
miRNA:   3'- -CGGCGGUGGUa---GG-------AGU--------UCGUCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 2929 0.74 0.322249
Target:  5'- gGCCGCCGCC-UCCgggCGGcCGGGCCGg -3'
miRNA:   3'- -CGGCGGUGGuAGGa--GUUcGUCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 3040 0.69 0.581344
Target:  5'- gGCCGCCGCCG-CCagCAGggggcGCAGGCUc- -3'
miRNA:   3'- -CGGCGGUGGUaGGa-GUU-----CGUCCGGua -5'
5803 5' -58.7 NC_001806.1 + 3198 0.69 0.59149
Target:  5'- cGCUGCCGCCggccacgcgcagGUCCcCGcGCAGGCgCAUg -3'
miRNA:   3'- -CGGCGGUGG------------UAGGaGUuCGUCCG-GUA- -5'
5803 5' -58.7 NC_001806.1 + 3911 0.66 0.762065
Target:  5'- cGCgCGgCGCCcgagAUCCggAAGCAGGCCu- -3'
miRNA:   3'- -CG-GCgGUGG----UAGGagUUCGUCCGGua -5'
5803 5' -58.7 NC_001806.1 + 4325 0.66 0.742863
Target:  5'- gGCCgGCCACCG-CCgc--GCGGGCCc- -3'
miRNA:   3'- -CGG-CGGUGGUaGGaguuCGUCCGGua -5'
5803 5' -58.7 NC_001806.1 + 4389 0.69 0.59149
Target:  5'- cGCCGCCGCCcggggCUUggGCGcGGCCu- -3'
miRNA:   3'- -CGGCGGUGGuag--GAGuuCGU-CCGGua -5'
5803 5' -58.7 NC_001806.1 + 4630 0.7 0.548156
Target:  5'- gGCCGCCACCGgccgugacgacgucUCCgCGgcGGCuGGGCCGg -3'
miRNA:   3'- -CGGCGGUGGU--------------AGGaGU--UCG-UCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 5919 0.66 0.762065
Target:  5'- uGCCGCCcccCCAUuggCCggCGGGCGGGaCCGc -3'
miRNA:   3'- -CGGCGGu--GGUA---GGa-GUUCGUCC-GGUa -5'
5803 5' -58.7 NC_001806.1 + 8819 0.66 0.742863
Target:  5'- gGCCGCC-UCGUCUUCGcuuuccgaguAGUAGGCUu- -3'
miRNA:   3'- -CGGCGGuGGUAGGAGU----------UCGUCCGGua -5'
5803 5' -58.7 NC_001806.1 + 12784 0.66 0.752517
Target:  5'- uGCCGcCCACCGcgCCggCGAuCAGGCCc- -3'
miRNA:   3'- -CGGC-GGUGGUa-GGa-GUUcGUCCGGua -5'
5803 5' -58.7 NC_001806.1 + 12893 0.68 0.652729
Target:  5'- cGgCGCCACCguccccacgggGUCCUcCAAGaGGGCCGa -3'
miRNA:   3'- -CgGCGGUGG-----------UAGGA-GUUCgUCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 20102 0.67 0.683234
Target:  5'- gGCCGgCGCCGUCUgCGGGCgucggucgcgccGGGCCu- -3'
miRNA:   3'- -CGGCgGUGGUAGGaGUUCG------------UCCGGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.