miRNA display CGI


Results 1 - 20 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5824 5' -62 NC_001806.1 + 76926 0.65 0.714264
Target:  5'- -cCGagGCgGAGUGGGACGAgguauggggucgcuUCgGCCg -3'
miRNA:   3'- caGCagCGgCUCGCCCUGCU--------------GGgCGG- -5'
5824 5' -62 NC_001806.1 + 66814 0.73 0.327455
Target:  5'- -----gGCCGAGCGGGGcCGGCCCgggugGCCg -3'
miRNA:   3'- cagcagCGGCUCGCCCU-GCUGGG-----CGG- -5'
5824 5' -62 NC_001806.1 + 20121 0.72 0.370802
Target:  5'- cGUCGgucgCGCCGGGCcuuuaugugcgccGGaGA-GACCCGCCc -3'
miRNA:   3'- -CAGCa---GCGGCUCG-------------CC-CUgCUGGGCGG- -5'
5824 5' -62 NC_001806.1 + 2491 0.71 0.379305
Target:  5'- cGUCGUCGCCGccgccgcacgcGGCcugggcggcgGGGGCGgGCCCGgCg -3'
miRNA:   3'- -CAGCAGCGGC-----------UCG----------CCCUGC-UGGGCgG- -5'
5824 5' -62 NC_001806.1 + 147653 0.71 0.379305
Target:  5'- -gCGUcCGCgGGGCGGG-CGGCCgGCUc -3'
miRNA:   3'- caGCA-GCGgCUCGCCCuGCUGGgCGG- -5'
5824 5' -62 NC_001806.1 + 38692 0.71 0.379305
Target:  5'- cUCGUucCGCCccccGGGCGGGGCc-CCCGCCc -3'
miRNA:   3'- cAGCA--GCGG----CUCGCCCUGcuGGGCGG- -5'
5824 5' -62 NC_001806.1 + 100383 0.71 0.387148
Target:  5'- -cCGUCGCCGGGCGGcgcGGgGGCCggggUGCCc -3'
miRNA:   3'- caGCAGCGGCUCGCC---CUgCUGG----GCGG- -5'
5824 5' -62 NC_001806.1 + 22877 0.71 0.395096
Target:  5'- -cCGUC-CCGGGgcuggcCGGGGCccGGCCCGCCa -3'
miRNA:   3'- caGCAGcGGCUC------GCCCUG--CUGGGCGG- -5'
5824 5' -62 NC_001806.1 + 3528 0.71 0.40315
Target:  5'- gGUCGUCGCCccccgcggggGAgGCGGGcGCGGCggacagCCGCCc -3'
miRNA:   3'- -CAGCAGCGG----------CU-CGCCC-UGCUG------GGCGG- -5'
5824 5' -62 NC_001806.1 + 24078 0.73 0.313637
Target:  5'- uGUCGgCGCUGGGCGcacaGGGCGugCUGCUg -3'
miRNA:   3'- -CAGCaGCGGCUCGC----CCUGCugGGCGG- -5'
5824 5' -62 NC_001806.1 + 23629 0.73 0.313637
Target:  5'- -cCGUgGCCGAGCucacGGACcACCCGCUg -3'
miRNA:   3'- caGCAgCGGCUCGc---CCUGcUGGGCGG- -5'
5824 5' -62 NC_001806.1 + 23708 0.73 0.306896
Target:  5'- cUCGaUCGCCGcGCGGuGCGccggGCCCGCCc -3'
miRNA:   3'- cAGC-AGCGGCuCGCCcUGC----UGGGCGG- -5'
5824 5' -62 NC_001806.1 + 5146 0.76 0.204096
Target:  5'- -aCGccaUCGCCGAuGCGGGGCGAUCCuCCg -3'
miRNA:   3'- caGC---AGCGGCU-CGCCCUGCUGGGcGG- -5'
5824 5' -62 NC_001806.1 + 33800 0.75 0.251195
Target:  5'- cUCGguaGCCGgccGGCGGGugGACUCGCg -3'
miRNA:   3'- cAGCag-CGGC---UCGCCCugCUGGGCGg -5'
5824 5' -62 NC_001806.1 + 101480 0.74 0.268777
Target:  5'- ----cCGCCGGGcCGGGACuggaGCCCGCCg -3'
miRNA:   3'- cagcaGCGGCUC-GCCCUGc---UGGGCGG- -5'
5824 5' -62 NC_001806.1 + 49699 0.74 0.274855
Target:  5'- --gGUUGCCGuGUGGGACGAguccgugcgcUCCGCCc -3'
miRNA:   3'- cagCAGCGGCuCGCCCUGCU----------GGGCGG- -5'
5824 5' -62 NC_001806.1 + 5069 0.74 0.287339
Target:  5'- cUCGUCGCgGucugggcucggGGUGGGcgGCGGCCCGUCg -3'
miRNA:   3'- cAGCAGCGgC-----------UCGCCC--UGCUGGGCGG- -5'
5824 5' -62 NC_001806.1 + 51130 0.74 0.287339
Target:  5'- uGUCGgggaggcgcgCGaCCGGGCuGGGA-GGCCCGCCa -3'
miRNA:   3'- -CAGCa---------GC-GGCUCG-CCCUgCUGGGCGG- -5'
5824 5' -62 NC_001806.1 + 45272 0.73 0.293747
Target:  5'- cUCGUCGCCuuagcGGCGGGAgacgcgGGCCCGCg -3'
miRNA:   3'- cAGCAGCGGc----UCGCCCUg-----CUGGGCGg -5'
5824 5' -62 NC_001806.1 + 78915 0.73 0.293747
Target:  5'- cUCaUCGCCGAGCGGccccucgcccGgGGCCCGCCg -3'
miRNA:   3'- cAGcAGCGGCUCGCCc---------UgCUGGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.