miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5824 5' -62 NC_001806.1 + 1472 0.76 0.199364
Target:  5'- cGUCGUCGCCGcgcagcaccAGCGGGGgGGCgUCGUCg -3'
miRNA:   3'- -CAGCAGCGGC---------UCGCCCUgCUG-GGCGG- -5'
5824 5' -62 NC_001806.1 + 2491 0.71 0.379305
Target:  5'- cGUCGUCGCCGccgccgcacgcGGCcugggcggcgGGGGCGgGCCCGgCg -3'
miRNA:   3'- -CAGCAGCGGC-----------UCG----------CCCUGC-UGGGCgG- -5'
5824 5' -62 NC_001806.1 + 2873 0.69 0.516442
Target:  5'- -gCGggCGuCCGAGCcgGGGGCGuCCgCGCCg -3'
miRNA:   3'- caGCa-GC-GGCUCG--CCCUGCuGG-GCGG- -5'
5824 5' -62 NC_001806.1 + 3296 0.67 0.620136
Target:  5'- -gCGUCGgCGuGCGGcGGCGgcggggaagcgggGCCCGCg -3'
miRNA:   3'- caGCAGCgGCuCGCC-CUGC-------------UGGGCGg -5'
5824 5' -62 NC_001806.1 + 3359 0.67 0.639494
Target:  5'- -gCGg-GCCGGGCcccggccagccccGGGACGG-CCGCCa -3'
miRNA:   3'- caGCagCGGCUCG-------------CCCUGCUgGGCGG- -5'
5824 5' -62 NC_001806.1 + 3528 0.71 0.40315
Target:  5'- gGUCGUCGCCccccgcggggGAgGCGGGcGCGGCggacagCCGCCc -3'
miRNA:   3'- -CAGCAGCGG----------CU-CGCCC-UGCUG------GGCGG- -5'
5824 5' -62 NC_001806.1 + 3851 0.66 0.707656
Target:  5'- -gCGUaGCCcaGGUGGGgcACGGCCCGCg -3'
miRNA:   3'- caGCAgCGGc-UCGCCC--UGCUGGGCGg -5'
5824 5' -62 NC_001806.1 + 4260 0.67 0.601776
Target:  5'- gGUCG-CGUCG-GCGuccagcuCGACCCGCCg -3'
miRNA:   3'- -CAGCaGCGGCuCGCccu----GCUGGGCGG- -5'
5824 5' -62 NC_001806.1 + 4429 0.69 0.498091
Target:  5'- --gGUgGcCCGGGCgGGGGCGGCguCCGCCc -3'
miRNA:   3'- cagCAgC-GGCUCG-CCCUGCUG--GGCGG- -5'
5824 5' -62 NC_001806.1 + 4709 0.67 0.601776
Target:  5'- -aCG-CGCCGcguAGCGGGgccucccguucGCGGCCCcggGCCg -3'
miRNA:   3'- caGCaGCGGC---UCGCCC-----------UGCUGGG---CGG- -5'
5824 5' -62 NC_001806.1 + 4931 0.69 0.48542
Target:  5'- cGUCcUCGCCGGcgucggugcccgccGCGGGGgcccuccCGuCCCGCCg -3'
miRNA:   3'- -CAGcAGCGGCU--------------CGCCCU-------GCuGGGCGG- -5'
5824 5' -62 NC_001806.1 + 5069 0.74 0.287339
Target:  5'- cUCGUCGCgGucugggcucggGGUGGGcgGCGGCCCGUCg -3'
miRNA:   3'- cAGCAGCGgC-----------UCGCCC--UGCUGGGCGG- -5'
5824 5' -62 NC_001806.1 + 5146 0.76 0.204096
Target:  5'- -aCGccaUCGCCGAuGCGGGGCGAUCCuCCg -3'
miRNA:   3'- caGC---AGCGGCU-CGCCCUGCUGGGcGG- -5'
5824 5' -62 NC_001806.1 + 5665 0.69 0.52479
Target:  5'- -gCGgggCGCgaGGGCGGGugGGuccgcgcCCCGCCc -3'
miRNA:   3'- caGCa--GCGg-CUCGCCCugCU-------GGGCGG- -5'
5824 5' -62 NC_001806.1 + 6288 0.66 0.659796
Target:  5'- ----aCGCgGAcGCGGGGgggaaaGACCCGCCc -3'
miRNA:   3'- cagcaGCGgCU-CGCCCUg-----CUGGGCGG- -5'
5824 5' -62 NC_001806.1 + 9794 0.67 0.611433
Target:  5'- -cCGaCGUgCGGGUGGGugGGCUCgGCCa -3'
miRNA:   3'- caGCaGCG-GCUCGCCCugCUGGG-CGG- -5'
5824 5' -62 NC_001806.1 + 15001 0.67 0.621104
Target:  5'- gGUCGUCccuuugaggugaGUCGGGUcguGGGGCGAgUUGCCa -3'
miRNA:   3'- -CAGCAG------------CGGCUCG---CCCUGCUgGGCGG- -5'
5824 5' -62 NC_001806.1 + 16588 0.68 0.572948
Target:  5'- cGUCGUCGuauaCCGGG-GGGA-GAUgCGCCa -3'
miRNA:   3'- -CAGCAGC----GGCUCgCCCUgCUGgGCGG- -5'
5824 5' -62 NC_001806.1 + 16948 0.69 0.507231
Target:  5'- uUUGUCuCCG-GCGGGACGGCuCCuCCu -3'
miRNA:   3'- cAGCAGcGGCuCGCCCUGCUG-GGcGG- -5'
5824 5' -62 NC_001806.1 + 20121 0.72 0.370802
Target:  5'- cGUCGgucgCGCCGGGCcuuuaugugcgccGGaGA-GACCCGCCc -3'
miRNA:   3'- -CAGCa---GCGGCUCG-------------CC-CUgCUGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.