miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5824 5' -62 NC_001806.1 + 20390 0.67 0.601776
Target:  5'- -gCGUcCGgCGGGCGGGACcggggGGCCCGg- -3'
miRNA:   3'- caGCA-GCgGCUCGCCCUG-----CUGGGCgg -5'
5824 5' -62 NC_001806.1 + 20561 0.71 0.418734
Target:  5'- ----aUGCgGGGCGGGGCGcggacccACCCGCCc -3'
miRNA:   3'- cagcaGCGgCUCGCCCUGC-------UGGGCGG- -5'
5824 5' -62 NC_001806.1 + 21279 0.71 0.418734
Target:  5'- -aCGaCGCCcGGCGGGACGGgagggccCCCGCg -3'
miRNA:   3'- caGCaGCGGcUCGCCCUGCU-------GGGCGg -5'
5824 5' -62 NC_001806.1 + 22193 0.69 0.516442
Target:  5'- uGUgGgCGcCCGAGCuGGGCGACgCCGCg -3'
miRNA:   3'- -CAgCaGC-GGCUCGcCCUGCUG-GGCGg -5'
5824 5' -62 NC_001806.1 + 22620 0.69 0.53506
Target:  5'- cGUCGcCGCCGccGCaccGGGCGagcgcgcgguGCCCGCCg -3'
miRNA:   3'- -CAGCaGCGGCu-CGc--CCUGC----------UGGGCGG- -5'
5824 5' -62 NC_001806.1 + 22678 0.68 0.563407
Target:  5'- aUCcUCGCCGcccUGGGGCGGCuguCCGCCg -3'
miRNA:   3'- cAGcAGCGGCuc-GCCCUGCUG---GGCGG- -5'
5824 5' -62 NC_001806.1 + 22877 0.71 0.395096
Target:  5'- -cCGUC-CCGGGgcuggcCGGGGCccGGCCCGCCa -3'
miRNA:   3'- caGCAGcGGCUC------GCCCUG--CUGGGCGG- -5'
5824 5' -62 NC_001806.1 + 23122 0.67 0.630782
Target:  5'- -cCG-CGCUGccGCGGGACccgcGCCUGCCg -3'
miRNA:   3'- caGCaGCGGCu-CGCCCUGc---UGGGCGG- -5'
5824 5' -62 NC_001806.1 + 23236 0.68 0.592138
Target:  5'- -aCGcCGCCGAcGCGcuGGCGGCcgCCGCCg -3'
miRNA:   3'- caGCaGCGGCU-CGCc-CUGCUG--GGCGG- -5'
5824 5' -62 NC_001806.1 + 23500 0.68 0.592138
Target:  5'- -cCGUgGCCGuGuCGcGcCGGCCCGCCg -3'
miRNA:   3'- caGCAgCGGCuC-GCcCuGCUGGGCGG- -5'
5824 5' -62 NC_001806.1 + 23629 0.73 0.313637
Target:  5'- -cCGUgGCCGAGCucacGGACcACCCGCUg -3'
miRNA:   3'- caGCAgCGGCUCGc---CCUGcUGGGCGG- -5'
5824 5' -62 NC_001806.1 + 23708 0.73 0.306896
Target:  5'- cUCGaUCGCCGcGCGGuGCGccggGCCCGCCc -3'
miRNA:   3'- cAGC-AGCGGCuCGCCcUGC----UGGGCGG- -5'
5824 5' -62 NC_001806.1 + 23916 0.66 0.679051
Target:  5'- -cCGcUGCCGGGCGaGGACcuGGCCgGCg -3'
miRNA:   3'- caGCaGCGGCUCGC-CCUG--CUGGgCGg -5'
5824 5' -62 NC_001806.1 + 23967 0.71 0.411306
Target:  5'- aGUgGUcCGCCGAGCGcGGCGGgcuguCCUGCCu -3'
miRNA:   3'- -CAgCA-GCGGCUCGCcCUGCU-----GGGCGG- -5'
5824 5' -62 NC_001806.1 + 24078 0.73 0.313637
Target:  5'- uGUCGgCGCUGGGCGcacaGGGCGugCUGCUg -3'
miRNA:   3'- -CAGCaGCGGCUCGC----CCUGCugGGCGG- -5'
5824 5' -62 NC_001806.1 + 26982 0.66 0.704815
Target:  5'- cUCGUgGgCCcgcGAGCGGGcCGACCgggcucgguuccggCGCCg -3'
miRNA:   3'- cAGCAgC-GG---CUCGCCCuGCUGG--------------GCGG- -5'
5824 5' -62 NC_001806.1 + 27826 0.66 0.688631
Target:  5'- uUUGggggCGCCGGGUugguccccgGGGACGgGgCCGCCc -3'
miRNA:   3'- cAGCa---GCGGCUCG---------CCCUGC-UgGGCGG- -5'
5824 5' -62 NC_001806.1 + 30018 0.68 0.582528
Target:  5'- gGUUGUUgaaGCgGAgGCGGGGCGGCCgagggGCCg -3'
miRNA:   3'- -CAGCAG---CGgCU-CGCCCUGCUGGg----CGG- -5'
5824 5' -62 NC_001806.1 + 31381 0.66 0.659796
Target:  5'- gGUCGggCGCUGGGUGGucucUGGCCgCGCCc -3'
miRNA:   3'- -CAGCa-GCGGCUCGCCcu--GCUGG-GCGG- -5'
5824 5' -62 NC_001806.1 + 31960 0.69 0.489024
Target:  5'- --gGUgGCgGGGCGGGACGGggCGCCc -3'
miRNA:   3'- cagCAgCGgCUCGCCCUGCUggGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.