miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5824 5' -62 NC_001806.1 + 102471 0.71 0.411306
Target:  5'- uGUCGUCGCgGuAGCGGuACuguGGCCgGCCg -3'
miRNA:   3'- -CAGCAGCGgC-UCGCCcUG---CUGGgCGG- -5'
5824 5' -62 NC_001806.1 + 109418 0.71 0.411306
Target:  5'- --gGUCGUgGGGCGcGGCGGCCCGUg -3'
miRNA:   3'- cagCAGCGgCUCGCcCUGCUGGGCGg -5'
5824 5' -62 NC_001806.1 + 23967 0.71 0.411306
Target:  5'- aGUgGUcCGCCGAGCGcGGCGGgcuguCCUGCCu -3'
miRNA:   3'- -CAgCA-GCGGCUCGCcCUGCU-----GGGCGG- -5'
5824 5' -62 NC_001806.1 + 20561 0.71 0.418734
Target:  5'- ----aUGCgGGGCGGGGCGcggacccACCCGCCc -3'
miRNA:   3'- cagcaGCGgCUCGCCCUGC-------UGGGCGG- -5'
5824 5' -62 NC_001806.1 + 21279 0.71 0.418734
Target:  5'- -aCGaCGCCcGGCGGGACGGgagggccCCCGCg -3'
miRNA:   3'- caGCaGCGGcUCGCCCUGCU-------GGGCGg -5'
5824 5' -62 NC_001806.1 + 124827 0.7 0.427922
Target:  5'- -aCGUCGCCccGAGCcuGGGCGuACCCGUg -3'
miRNA:   3'- caGCAGCGG--CUCGc-CCUGC-UGGGCGg -5'
5824 5' -62 NC_001806.1 + 119835 0.7 0.439787
Target:  5'- cGUCGUCGucuccuacgagaacuCCGuggcGUGGGGCGggcgacgcGCCCGCCc -3'
miRNA:   3'- -CAGCAGC---------------GGCu---CGCCCUGC--------UGGGCGG- -5'
5824 5' -62 NC_001806.1 + 107377 0.7 0.453573
Target:  5'- cUCGgCGgUGcAGCGGGaACGcGCCCGCCg -3'
miRNA:   3'- cAGCaGCgGC-UCGCCC-UGC-UGGGCGG- -5'
5824 5' -62 NC_001806.1 + 57747 0.7 0.462307
Target:  5'- -gCGUCuGgaGcGGCGGGACGGgCCGCCg -3'
miRNA:   3'- caGCAG-CggC-UCGCCCUGCUgGGCGG- -5'
5824 5' -62 NC_001806.1 + 147497 0.7 0.470243
Target:  5'- -gCGgCGCCGGagggggcggcgccGCGGGAgGGCCCGUg -3'
miRNA:   3'- caGCaGCGGCU-------------CGCCCUgCUGGGCGg -5'
5824 5' -62 NC_001806.1 + 103808 0.7 0.480036
Target:  5'- -gCGcCGCCGcGGCGGcGACGgGCUCGCUg -3'
miRNA:   3'- caGCaGCGGC-UCGCC-CUGC-UGGGCGG- -5'
5824 5' -62 NC_001806.1 + 4931 0.69 0.48542
Target:  5'- cGUCcUCGCCGGcgucggugcccgccGCGGGGgcccuccCGuCCCGCCg -3'
miRNA:   3'- -CAGcAGCGGCU--------------CGCCCU-------GCuGGGCGG- -5'
5824 5' -62 NC_001806.1 + 31960 0.69 0.489024
Target:  5'- --gGUgGCgGGGCGGGACGGggCGCCc -3'
miRNA:   3'- cagCAgCGgCUCGCCCUGCUggGCGG- -5'
5824 5' -62 NC_001806.1 + 4429 0.69 0.498091
Target:  5'- --gGUgGcCCGGGCgGGGGCGGCguCCGCCc -3'
miRNA:   3'- cagCAgC-GGCUCG-CCCUGCUG--GGCGG- -5'
5824 5' -62 NC_001806.1 + 38945 0.69 0.498091
Target:  5'- -aCG-CGUCGGGUGGGugGGCCC-Ca -3'
miRNA:   3'- caGCaGCGGCUCGCCCugCUGGGcGg -5'
5824 5' -62 NC_001806.1 + 36195 0.69 0.498091
Target:  5'- cGUCGaugcUCuGCCGcGCGGG-CGGCCaUGCCg -3'
miRNA:   3'- -CAGC----AG-CGGCuCGCCCuGCUGG-GCGG- -5'
5824 5' -62 NC_001806.1 + 85356 0.69 0.506314
Target:  5'- uUCGUccacacgauccugCGCgGAgGCGGGgcguGCGACCCGCg -3'
miRNA:   3'- cAGCA-------------GCGgCU-CGCCC----UGCUGGGCGg -5'
5824 5' -62 NC_001806.1 + 73127 0.69 0.507231
Target:  5'- --gGUCGCCGAggcggGCGaGGACGACggGCCc -3'
miRNA:   3'- cagCAGCGGCU-----CGC-CCUGCUGggCGG- -5'
5824 5' -62 NC_001806.1 + 16948 0.69 0.507231
Target:  5'- uUUGUCuCCG-GCGGGACGGCuCCuCCu -3'
miRNA:   3'- cAGCAGcGGCuCGCCCUGCUG-GGcGG- -5'
5824 5' -62 NC_001806.1 + 22193 0.69 0.516442
Target:  5'- uGUgGgCGcCCGAGCuGGGCGACgCCGCg -3'
miRNA:   3'- -CAgCaGC-GGCUCGcCCUGCUG-GGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.