miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5824 5' -62 NC_001806.1 + 3359 0.67 0.639494
Target:  5'- -gCGg-GCCGGGCcccggccagccccGGGACGG-CCGCCa -3'
miRNA:   3'- caGCagCGGCUCG-------------CCCUGCUgGGCGG- -5'
5824 5' -62 NC_001806.1 + 23122 0.67 0.630782
Target:  5'- -cCG-CGCUGccGCGGGACccgcGCCUGCCg -3'
miRNA:   3'- caGCaGCGGCu-CGCCCUGc---UGGGCGG- -5'
5824 5' -62 NC_001806.1 + 15001 0.67 0.621104
Target:  5'- gGUCGUCccuuugaggugaGUCGGGUcguGGGGCGAgUUGCCa -3'
miRNA:   3'- -CAGCAG------------CGGCUCG---CCCUGCUgGGCGG- -5'
5824 5' -62 NC_001806.1 + 82151 0.67 0.621104
Target:  5'- --gGUCGCCGA--GGGACaGcCCCGUCg -3'
miRNA:   3'- cagCAGCGGCUcgCCCUG-CuGGGCGG- -5'
5824 5' -62 NC_001806.1 + 99055 0.67 0.621104
Target:  5'- -aCGgugaCGCCGA-CGaGGACGACCUGUg -3'
miRNA:   3'- caGCa---GCGGCUcGC-CCUGCUGGGCGg -5'
5824 5' -62 NC_001806.1 + 3296 0.67 0.620136
Target:  5'- -gCGUCGgCGuGCGGcGGCGgcggggaagcgggGCCCGCg -3'
miRNA:   3'- caGCAGCgGCuCGCC-CUGC-------------UGGGCGg -5'
5824 5' -62 NC_001806.1 + 32979 0.67 0.611433
Target:  5'- --gGUcCGCCGGGgcccCGGGcCGGgCCGCCa -3'
miRNA:   3'- cagCA-GCGGCUC----GCCCuGCUgGGCGG- -5'
5824 5' -62 NC_001806.1 + 9794 0.67 0.611433
Target:  5'- -cCGaCGUgCGGGUGGGugGGCUCgGCCa -3'
miRNA:   3'- caGCaGCG-GCUCGCCCugCUGGG-CGG- -5'
5824 5' -62 NC_001806.1 + 148087 0.67 0.601776
Target:  5'- -aUGggCGCCGAGgGGGGCGcuguCCgaGCCg -3'
miRNA:   3'- caGCa-GCGGCUCgCCCUGCu---GGg-CGG- -5'
5824 5' -62 NC_001806.1 + 75239 0.67 0.601776
Target:  5'- -gCGUCcugGUCGAcGCGGuGACGGCCCugggcgcgGCCg -3'
miRNA:   3'- caGCAG---CGGCU-CGCC-CUGCUGGG--------CGG- -5'
5824 5' -62 NC_001806.1 + 4709 0.67 0.601776
Target:  5'- -aCG-CGCCGcguAGCGGGgccucccguucGCGGCCCcggGCCg -3'
miRNA:   3'- caGCaGCGGC---UCGCCC-----------UGCUGGG---CGG- -5'
5824 5' -62 NC_001806.1 + 50508 0.67 0.601776
Target:  5'- gGUCGUggggGCCGAGCacgaggcgcuGGGCGACaCCGCa -3'
miRNA:   3'- -CAGCAg---CGGCUCGc---------CCUGCUG-GGCGg -5'
5824 5' -62 NC_001806.1 + 4260 0.67 0.601776
Target:  5'- gGUCG-CGUCG-GCGuccagcuCGACCCGCCg -3'
miRNA:   3'- -CAGCaGCGGCuCGCccu----GCUGGGCGG- -5'
5824 5' -62 NC_001806.1 + 20390 0.67 0.601776
Target:  5'- -gCGUcCGgCGGGCGGGACcggggGGCCCGg- -3'
miRNA:   3'- caGCA-GCgGCUCGCCCUG-----CUGGGCgg -5'
5824 5' -62 NC_001806.1 + 93284 0.68 0.592138
Target:  5'- ---aUCuCCGAggGCGGGGCGGCCguCGCCa -3'
miRNA:   3'- cagcAGcGGCU--CGCCCUGCUGG--GCGG- -5'
5824 5' -62 NC_001806.1 + 23500 0.68 0.592138
Target:  5'- -cCGUgGCCGuGuCGcGcCGGCCCGCCg -3'
miRNA:   3'- caGCAgCGGCuC-GCcCuGCUGGGCGG- -5'
5824 5' -62 NC_001806.1 + 23236 0.68 0.592138
Target:  5'- -aCGcCGCCGAcGCGcuGGCGGCcgCCGCCg -3'
miRNA:   3'- caGCaGCGGCU-CGCc-CUGCUG--GGCGG- -5'
5824 5' -62 NC_001806.1 + 86300 0.68 0.591176
Target:  5'- gGUCGgugaugCGCCGAuggGCGucuacgaGGACGGCCCcgaacGCCu -3'
miRNA:   3'- -CAGCa-----GCGGCU---CGC-------CCUGCUGGG-----CGG- -5'
5824 5' -62 NC_001806.1 + 30018 0.68 0.582528
Target:  5'- gGUUGUUgaaGCgGAgGCGGGGCGGCCgagggGCCg -3'
miRNA:   3'- -CAGCAG---CGgCU-CGCCCUGCUGGg----CGG- -5'
5824 5' -62 NC_001806.1 + 142128 0.68 0.582528
Target:  5'- gGUCGUCGgCGucugcuuuuuGUGGcGGCGuCCCGUCg -3'
miRNA:   3'- -CAGCAGCgGCu---------CGCC-CUGCuGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.