miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5824 5' -62 NC_001806.1 + 49582 0.68 0.582528
Target:  5'- cGUCGg-GCCGgaggacggcGGCGGGGCccguucCCCGCCc -3'
miRNA:   3'- -CAGCagCGGC---------UCGCCCUGcu----GGGCGG- -5'
5824 5' -62 NC_001806.1 + 142128 0.68 0.582528
Target:  5'- gGUCGUCGgCGucugcuuuuuGUGGcGGCGuCCCGUCg -3'
miRNA:   3'- -CAGCAGCgGCu---------CGCC-CUGCuGGGCGG- -5'
5824 5' -62 NC_001806.1 + 30018 0.68 0.582528
Target:  5'- gGUUGUUgaaGCgGAgGCGGGGCGGCCgagggGCCg -3'
miRNA:   3'- -CAGCAG---CGgCU-CGCCCUGCUGGg----CGG- -5'
5824 5' -62 NC_001806.1 + 148916 0.68 0.582528
Target:  5'- aGUCGUCGUCauGGUGGucGGCGucccCCCGCCc -3'
miRNA:   3'- -CAGCAGCGGc-UCGCC--CUGCu---GGGCGG- -5'
5824 5' -62 NC_001806.1 + 16588 0.68 0.572948
Target:  5'- cGUCGUCGuauaCCGGG-GGGA-GAUgCGCCa -3'
miRNA:   3'- -CAGCAGC----GGCUCgCCCUgCUGgGCGG- -5'
5824 5' -62 NC_001806.1 + 47859 0.68 0.572948
Target:  5'- -gCGUaCGCCGAGCaGaugauGCGGCCCGaCCu -3'
miRNA:   3'- caGCA-GCGGCUCGcCc----UGCUGGGC-GG- -5'
5824 5' -62 NC_001806.1 + 124498 0.68 0.572948
Target:  5'- gGUCGgaCGCCGucucgcuccGGCGGGcCGuCCuCGCCg -3'
miRNA:   3'- -CAGCa-GCGGC---------UCGCCCuGCuGG-GCGG- -5'
5824 5' -62 NC_001806.1 + 22678 0.68 0.563407
Target:  5'- aUCcUCGCCGcccUGGGGCGGCuguCCGCCg -3'
miRNA:   3'- cAGcAGCGGCuc-GCCCUGCUG---GGCGG- -5'
5824 5' -62 NC_001806.1 + 143413 0.68 0.563407
Target:  5'- --gGUCGCggcucuuaCGAGCGGccCGGCCCGCg -3'
miRNA:   3'- cagCAGCG--------GCUCGCCcuGCUGGGCGg -5'
5824 5' -62 NC_001806.1 + 92910 0.68 0.557702
Target:  5'- cGUgGUcCGCgcaGGGCGGGGCGggccuggaggccgggGCCCGCg -3'
miRNA:   3'- -CAgCA-GCGg--CUCGCCCUGC---------------UGGGCGg -5'
5824 5' -62 NC_001806.1 + 120348 0.68 0.553908
Target:  5'- gGUCGUC-CCGcuCGGcGACGACCUcCCg -3'
miRNA:   3'- -CAGCAGcGGCucGCC-CUGCUGGGcGG- -5'
5824 5' -62 NC_001806.1 + 51576 0.68 0.550122
Target:  5'- uUCGgccgccacccaggCGCUGGGCGaGGugGAgCUGCCc -3'
miRNA:   3'- cAGCa------------GCGGCUCGC-CCugCUgGGCGG- -5'
5824 5' -62 NC_001806.1 + 94183 0.68 0.544458
Target:  5'- cGUCGUCugagGCCGGGCcuGGA-GGCCCagGCCg -3'
miRNA:   3'- -CAGCAG----CGGCUCGc-CCUgCUGGG--CGG- -5'
5824 5' -62 NC_001806.1 + 105347 0.68 0.544458
Target:  5'- aUCGccCGCCGGcuGcCGGGACGcCCUGCUg -3'
miRNA:   3'- cAGCa-GCGGCU--C-GCCCUGCuGGGCGG- -5'
5824 5' -62 NC_001806.1 + 49278 0.69 0.53506
Target:  5'- -cCGUgCGCCGucGaCGGGAaGGCCCGCg -3'
miRNA:   3'- caGCA-GCGGCu-C-GCCCUgCUGGGCGg -5'
5824 5' -62 NC_001806.1 + 109230 0.69 0.53506
Target:  5'- -gCGUgggGCCGGGCGGGGCGGaauCCUggGCCc -3'
miRNA:   3'- caGCAg--CGGCUCGCCCUGCU---GGG--CGG- -5'
5824 5' -62 NC_001806.1 + 145281 0.69 0.53506
Target:  5'- gGUCGgccaCGCCacucGCGGGugGGCUCGUg -3'
miRNA:   3'- -CAGCa---GCGGcu--CGCCCugCUGGGCGg -5'
5824 5' -62 NC_001806.1 + 61530 0.69 0.53506
Target:  5'- -cCGUacacgcgGUCGGGCGGGggcuugGCGuGCCCGCCg -3'
miRNA:   3'- caGCAg------CGGCUCGCCC------UGC-UGGGCGG- -5'
5824 5' -62 NC_001806.1 + 151686 0.69 0.53506
Target:  5'- aGUC-UCgGCCGGGgGGGcccggGCuGCCCGCCg -3'
miRNA:   3'- -CAGcAG-CGGCUCgCCC-----UGcUGGGCGG- -5'
5824 5' -62 NC_001806.1 + 22620 0.69 0.53506
Target:  5'- cGUCGcCGCCGccGCaccGGGCGagcgcgcgguGCCCGCCg -3'
miRNA:   3'- -CAGCaGCGGCu-CGc--CCUGC----------UGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.