miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5824 5' -62 NC_001806.1 + 151686 0.69 0.53506
Target:  5'- aGUC-UCgGCCGGGgGGGcccggGCuGCCCGCCg -3'
miRNA:   3'- -CAGcAG-CGGCUCgCCC-----UGcUGGGCGG- -5'
5824 5' -62 NC_001806.1 + 151270 0.66 0.688631
Target:  5'- ----aCGCCGGGCGGuGGgGGCCgggGCCg -3'
miRNA:   3'- cagcaGCGGCUCGCC-CUgCUGGg--CGG- -5'
5824 5' -62 NC_001806.1 + 150262 0.66 0.669437
Target:  5'- cGUCGgUGCCc--CGGGGCuuCCCGCCu -3'
miRNA:   3'- -CAGCaGCGGcucGCCCUGcuGGGCGG- -5'
5824 5' -62 NC_001806.1 + 148916 0.68 0.582528
Target:  5'- aGUCGUCGUCauGGUGGucGGCGucccCCCGCCc -3'
miRNA:   3'- -CAGCAGCGGc-UCGCC--CUGCu---GGGCGG- -5'
5824 5' -62 NC_001806.1 + 148087 0.67 0.601776
Target:  5'- -aUGggCGCCGAGgGGGGCGcuguCCgaGCCg -3'
miRNA:   3'- caGCa-GCGGCUCgCCCUGCu---GGg-CGG- -5'
5824 5' -62 NC_001806.1 + 147653 0.71 0.379305
Target:  5'- -gCGUcCGCgGGGCGGG-CGGCCgGCUc -3'
miRNA:   3'- caGCA-GCGgCUCGCCCuGCUGGgCGG- -5'
5824 5' -62 NC_001806.1 + 147497 0.7 0.470243
Target:  5'- -gCGgCGCCGGagggggcggcgccGCGGGAgGGCCCGUg -3'
miRNA:   3'- caGCaGCGGCU-------------CGCCCUgCUGGGCGg -5'
5824 5' -62 NC_001806.1 + 145281 0.69 0.53506
Target:  5'- gGUCGgccaCGCCacucGCGGGugGGCUCGUg -3'
miRNA:   3'- -CAGCa---GCGGcu--CGCCCugCUGGGCGg -5'
5824 5' -62 NC_001806.1 + 143413 0.68 0.563407
Target:  5'- --gGUCGCggcucuuaCGAGCGGccCGGCCCGCg -3'
miRNA:   3'- cagCAGCG--------GCUCGCCcuGCUGGGCGg -5'
5824 5' -62 NC_001806.1 + 142128 0.68 0.582528
Target:  5'- gGUCGUCGgCGucugcuuuuuGUGGcGGCGuCCCGUCg -3'
miRNA:   3'- -CAGCAGCgGCu---------CGCC-CUGCuGGGCGG- -5'
5824 5' -62 NC_001806.1 + 124827 0.7 0.427922
Target:  5'- -aCGUCGCCccGAGCcuGGGCGuACCCGUg -3'
miRNA:   3'- caGCAGCGG--CUCGc-CCUGC-UGGGCGg -5'
5824 5' -62 NC_001806.1 + 124498 0.68 0.572948
Target:  5'- gGUCGgaCGCCGucucgcuccGGCGGGcCGuCCuCGCCg -3'
miRNA:   3'- -CAGCa-GCGGC---------UCGCCCuGCuGG-GCGG- -5'
5824 5' -62 NC_001806.1 + 121355 0.68 0.582528
Target:  5'- aGUgGUCGgCGAGCuGGAUGGCgCGUa -3'
miRNA:   3'- -CAgCAGCgGCUCGcCCUGCUGgGCGg -5'
5824 5' -62 NC_001806.1 + 120348 0.68 0.553908
Target:  5'- gGUCGUC-CCGcuCGGcGACGACCUcCCg -3'
miRNA:   3'- -CAGCAGcGGCucGCC-CUGCUGGGcGG- -5'
5824 5' -62 NC_001806.1 + 119835 0.7 0.439787
Target:  5'- cGUCGUCGucuccuacgagaacuCCGuggcGUGGGGCGggcgacgcGCCCGCCc -3'
miRNA:   3'- -CAGCAGC---------------GGCu---CGCCCUGC--------UGGGCGG- -5'
5824 5' -62 NC_001806.1 + 116169 0.67 0.650136
Target:  5'- -gCGcugCGaaGGGCGGGugGuauuCCUGCCg -3'
miRNA:   3'- caGCa--GCggCUCGCCCugCu---GGGCGG- -5'
5824 5' -62 NC_001806.1 + 113451 0.69 0.516442
Target:  5'- aUCGcCGCCGuucGCGGGGCGuucgacgaCCGCa -3'
miRNA:   3'- cAGCaGCGGCu--CGCCCUGCug------GGCGg -5'
5824 5' -62 NC_001806.1 + 112407 0.67 0.640462
Target:  5'- -cCGUCugacgcauGCCGAcacGCGcGGGCGGCCgGUCg -3'
miRNA:   3'- caGCAG--------CGGCU---CGC-CCUGCUGGgCGG- -5'
5824 5' -62 NC_001806.1 + 111547 0.66 0.669437
Target:  5'- --gGUgGCCGGGCguugGGGugGAUCUuaGCCu -3'
miRNA:   3'- cagCAgCGGCUCG----CCCugCUGGG--CGG- -5'
5824 5' -62 NC_001806.1 + 109418 0.71 0.411306
Target:  5'- --gGUCGUgGGGCGcGGCGGCCCGUg -3'
miRNA:   3'- cagCAGCGgCUCGCcCUGCUGGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.