miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5825 3' -60.9 NC_001806.1 + 147310 0.67 0.60436
Target:  5'- gGGCccacCCUGGccgCGCC-CCCCCGGCCc- -3'
miRNA:   3'- -UCGc---GGACCa--GUGGaGGGGGUUGGug -5'
5825 3' -60.9 NC_001806.1 + 93958 0.67 0.60436
Target:  5'- -cCGCCUcGGUcCACCgcauaCUCCGGCCGCg -3'
miRNA:   3'- ucGCGGA-CCA-GUGGag---GGGGUUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 21792 0.67 0.598387
Target:  5'- cGGCGCCggcagcccccgggcGGaCGCCgCCCCCGcccggGCCACc -3'
miRNA:   3'- -UCGCGGa-------------CCaGUGGaGGGGGU-----UGGUG- -5'
5825 3' -60.9 NC_001806.1 + 78041 0.67 0.59441
Target:  5'- uGGCGCUggUGGcCAgCUCCCCgGAaCACa -3'
miRNA:   3'- -UCGCGG--ACCaGUgGAGGGGgUUgGUG- -5'
5825 3' -60.9 NC_001806.1 + 20145 0.67 0.59441
Target:  5'- uGCGCCgGaGagACCcgCCCCCcGCCGCc -3'
miRNA:   3'- uCGCGGaC-CagUGGa-GGGGGuUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 119188 0.67 0.59441
Target:  5'- uGGCGCCgc--CGCC-CCgCCGGCCGCg -3'
miRNA:   3'- -UCGCGGaccaGUGGaGGgGGUUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 111554 0.67 0.584487
Target:  5'- gGGCGUUggGGUggaucuuaGCCUCCCCgGGCCAa -3'
miRNA:   3'- -UCGCGGa-CCAg-------UGGAGGGGgUUGGUg -5'
5825 3' -60.9 NC_001806.1 + 74575 0.67 0.584487
Target:  5'- uGCGCCcGGcgcgUCGCCcuaCCCCGACgACg -3'
miRNA:   3'- uCGCGGaCC----AGUGGag-GGGGUUGgUG- -5'
5825 3' -60.9 NC_001806.1 + 106335 0.67 0.584487
Target:  5'- gGGcCGCgUGauaCACCgccCCCCCGACCGCc -3'
miRNA:   3'- -UC-GCGgACca-GUGGa--GGGGGUUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 132192 0.67 0.583496
Target:  5'- cGCGCCUGGcggccauUCGCgacacCCCCCAgugcgcguccGCCGCu -3'
miRNA:   3'- uCGCGGACC-------AGUGga---GGGGGU----------UGGUG- -5'
5825 3' -60.9 NC_001806.1 + 112880 0.68 0.574596
Target:  5'- cGGgGaCCUaGUCcCCgCCCCCGGCCACc -3'
miRNA:   3'- -UCgC-GGAcCAGuGGaGGGGGUUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 82990 0.68 0.564744
Target:  5'- uGGCGCgUGcGcC-CCUCCcgCCCAGCCAUg -3'
miRNA:   3'- -UCGCGgAC-CaGuGGAGG--GGGUUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 74270 0.68 0.564744
Target:  5'- cGCGCCgccauuccCGCCccgCCCCCGAUCGCg -3'
miRNA:   3'- uCGCGGacca----GUGGa--GGGGGUUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 24816 0.68 0.554937
Target:  5'- cGGCGCCgcccgGGauUCGCUgggCCUCGGCCACg -3'
miRNA:   3'- -UCGCGGa----CC--AGUGGag-GGGGUUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 141919 0.68 0.552982
Target:  5'- aGGCGCCgaGGUCGCCgcaggcgacaccCCCCCGuuuguuaaauCCAUg -3'
miRNA:   3'- -UCGCGGa-CCAGUGGa-----------GGGGGUu---------GGUG- -5'
5825 3' -60.9 NC_001806.1 + 77447 0.68 0.545181
Target:  5'- cGCGCCcGGgcgucCGCC-CCaCCCGGCCAa -3'
miRNA:   3'- uCGCGGaCCa----GUGGaGG-GGGUUGGUg -5'
5825 3' -60.9 NC_001806.1 + 39070 0.68 0.525842
Target:  5'- aAGCGCCacgagCACCa-CCCCGGCCACc -3'
miRNA:   3'- -UCGCGGacca-GUGGagGGGGUUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 52531 0.68 0.524882
Target:  5'- uGGCGUCucgccggacgacgUGGUCcgcgggGCCUCCCCCgGACgACa -3'
miRNA:   3'- -UCGCGG-------------ACCAG------UGGAGGGGG-UUGgUG- -5'
5825 3' -60.9 NC_001806.1 + 73340 0.69 0.516269
Target:  5'- cAGCGCCUuacGGUCGCCguaUCCGGCCu- -3'
miRNA:   3'- -UCGCGGA---CCAGUGGaggGGGUUGGug -5'
5825 3' -60.9 NC_001806.1 + 52757 0.69 0.516269
Target:  5'- uGCGaacgaCCcGGUCGCCgagCCCCCcgcugcGGCCACa -3'
miRNA:   3'- uCGC-----GGaCCAGUGGa--GGGGG------UUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.