Results 21 - 40 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5825 | 3' | -60.9 | NC_001806.1 | + | 71079 | 0.66 | 0.674158 |
Target: 5'- aGGgGCCUGGggggacuacaGCCUcggCCCCCugggccagacGACCGCg -3' miRNA: 3'- -UCgCGGACCag--------UGGA---GGGGG----------UUGGUG- -5' |
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5825 | 3' | -60.9 | NC_001806.1 | + | 85716 | 0.66 | 0.674158 |
Target: 5'- uAGCGCC-GG-CACCcaccgCCCCgAACCcuGCg -3' miRNA: 3'- -UCGCGGaCCaGUGGa----GGGGgUUGG--UG- -5' |
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5825 | 3' | -60.9 | NC_001806.1 | + | 55257 | 0.66 | 0.674158 |
Target: 5'- cGGCGCCcGG--GCCggCCCCCu-CCGCc -3' miRNA: 3'- -UCGCGGaCCagUGGa-GGGGGuuGGUG- -5' |
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5825 | 3' | -60.9 | NC_001806.1 | + | 21574 | 0.66 | 0.664222 |
Target: 5'- -cCGCCU-GUCGCCgcgCCcgccggCCCAGCCGCc -3' miRNA: 3'- ucGCGGAcCAGUGGa--GG------GGGUUGGUG- -5' |
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5825 | 3' | -60.9 | NC_001806.1 | + | 56454 | 0.66 | 0.664222 |
Target: 5'- aAGCGCCUGacaCAgCUCCgUCAggGCCACc -3' miRNA: 3'- -UCGCGGACca-GUgGAGGgGGU--UGGUG- -5' |
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5825 | 3' | -60.9 | NC_001806.1 | + | 57041 | 0.66 | 0.664222 |
Target: 5'- cGgGCCcGGg-GCCggggCCCCCGGCUGCg -3' miRNA: 3'- uCgCGGaCCagUGGa---GGGGGUUGGUG- -5' |
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5825 | 3' | -60.9 | NC_001806.1 | + | 23724 | 0.66 | 0.654262 |
Target: 5'- uGCGCCgGGccCGCCcccgCCgCCCAgGCCGCg -3' miRNA: 3'- uCGCGGaCCa-GUGGa---GG-GGGU-UGGUG- -5' |
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5825 | 3' | -60.9 | NC_001806.1 | + | 44685 | 0.66 | 0.654262 |
Target: 5'- -aCGCUUGGggccccgagCGCCcCCUCCAACCAa -3' miRNA: 3'- ucGCGGACCa--------GUGGaGGGGGUUGGUg -5' |
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5825 | 3' | -60.9 | NC_001806.1 | + | 23246 | 0.66 | 0.654262 |
Target: 5'- cGCGCUggcGGcCGCCgccgCCUCCGccgcGCCGCg -3' miRNA: 3'- uCGCGGa--CCaGUGGa---GGGGGU----UGGUG- -5' |
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5825 | 3' | -60.9 | NC_001806.1 | + | 55820 | 0.66 | 0.654262 |
Target: 5'- gAGCcCCcGGaCACCcccgCCCCgAGCCACa -3' miRNA: 3'- -UCGcGGaCCaGUGGa---GGGGgUUGGUG- -5' |
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5825 | 3' | -60.9 | NC_001806.1 | + | 1683 | 0.66 | 0.653265 |
Target: 5'- cGCGCCgGG-CGCCauggcgucgguggUCCCCgaGGCCGCc -3' miRNA: 3'- uCGCGGaCCaGUGG-------------AGGGGg-UUGGUG- -5' |
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5825 | 3' | -60.9 | NC_001806.1 | + | 40170 | 0.66 | 0.644285 |
Target: 5'- cGCGCCgUGG-CGCgaCUCgCCCGGCCGu -3' miRNA: 3'- uCGCGG-ACCaGUG--GAGgGGGUUGGUg -5' |
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5825 | 3' | -60.9 | NC_001806.1 | + | 102337 | 0.66 | 0.644285 |
Target: 5'- cGCGUCccgGGggACgUCCCCCGggGCCGCc -3' miRNA: 3'- uCGCGGa--CCagUGgAGGGGGU--UGGUG- -5' |
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5825 | 3' | -60.9 | NC_001806.1 | + | 109372 | 0.67 | 0.634299 |
Target: 5'- -cCGCUUGG-CGCCcgcgcCCCCCGACCcCg -3' miRNA: 3'- ucGCGGACCaGUGGa----GGGGGUUGGuG- -5' |
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5825 | 3' | -60.9 | NC_001806.1 | + | 83579 | 0.67 | 0.631303 |
Target: 5'- aGGCGacCCUGGUCGgCUCCUUCGcacgcuuugcccucACCAUa -3' miRNA: 3'- -UCGC--GGACCAGUgGAGGGGGU--------------UGGUG- -5' |
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5825 | 3' | -60.9 | NC_001806.1 | + | 28525 | 0.67 | 0.624311 |
Target: 5'- cAGgGCCcggGGUCGCCgugggacCCCCUGACuCAUa -3' miRNA: 3'- -UCgCGGa--CCAGUGGa------GGGGGUUG-GUG- -5' |
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5825 | 3' | -60.9 | NC_001806.1 | + | 75366 | 0.67 | 0.624311 |
Target: 5'- cGCGCg-GGUgGCCaUCgCCCAGCuCACg -3' miRNA: 3'- uCGCGgaCCAgUGG-AGgGGGUUG-GUG- -5' |
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5825 | 3' | -60.9 | NC_001806.1 | + | 92488 | 0.67 | 0.614329 |
Target: 5'- aGGCGCg-GGUCGCCagCCUCCAgagcgccuACCAg -3' miRNA: 3'- -UCGCGgaCCAGUGGa-GGGGGU--------UGGUg -5' |
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5825 | 3' | -60.9 | NC_001806.1 | + | 59614 | 0.67 | 0.614329 |
Target: 5'- aAGCGCCgGG--GCCUUggggCCCCGGCCGg -3' miRNA: 3'- -UCGCGGaCCagUGGAG----GGGGUUGGUg -5' |
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5825 | 3' | -60.9 | NC_001806.1 | + | 147310 | 0.67 | 0.60436 |
Target: 5'- gGGCccacCCUGGccgCGCC-CCCCCGGCCc- -3' miRNA: 3'- -UCGc---GGACCa--GUGGaGGGGGUUGGug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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